RetrogeneDB ID:
retro_mputfur_721
Organism:
Location:
GL896941.1:1583563-1584044 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.06 %
Coverage:
53.72 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
Rpl5
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L5 [Source:MGI Symbol;Acc:MGI:102854]

Genomic region (view in browser)





>retro_mputfur_721
CAACCTGGTGCCTTCACCTGCTATTTGGATGAAGGGCTTGCCAGAACTACTACTGGAAAT
AAGGTTTTTGGGGGCCCTCAAGGGAGCAGTGGATGGAGGCTTGTCTATCCCTCACAGTAC
CAAATTATTCCCTGGTTATGATTCAGAAAGCAAGGAATTCAATGAAGAAGTACATTGAAA
GCACATCATGGGTCAGAATGTTGCAGATTATATGCGTGACCTAATGGAAGAAGACAAAGA
TGCATACAAGAAACAATTCTCTCGATACATAAAGAACAATGTAACTCCAGACATGATGGA
GGAGATGTATAAGAAAGCTCATGCTGCTATACGAGAGAACCCAGTCTACAAGAAGAAGCC
TAAGAAAGAAGTTAAAAAGAAGAGGTGGAAGCATCCCGAAATGTGTCTTGCCCAAAAGAA
AGATCGGGTAGCTCAGAAGAAGGCAAGCTTCCTTTGAGCTCAGGAGTGGGCTGCTGAGAG
C


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QPGAFTCYLDAGLARTTTGNKVF-GALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPD-M
QPGAFTCYLD.GLARTTTGNKVF.GALKGAVDGGLSIPHSTK.FPGYDSESKEFN.EVH.KHIMGQNVADYMR.LMEED.DAYKKQFS.YIKNNVTPD.M
Retrocopy
QPGAFTCYLDEGLARTTTGNKVF\GALKGAVDGGLSIPHSTKLFPGYDSESKEFNEEVH*KHIMGQNVADYMRDLMEEDKDAYKKQFSRYIKNNVTPDMM


Parental protein
EEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES
EEMYKKAHAAIRENPVY.KKPKKEVKKKRW..P.M.LAQKKDRVAQKKASFL.AQE.AAES
Retrocopy
EEMYKKAHAAIRENPVYKKKPKKEVKKKRWKHPEMCLAQKKDRVAQKKASFL*AQEWAAES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide