RetrogeneDB ID:
retro_mputfur_723
Organism:
Location:
GL896941.1:7407671-7408397 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
93.03 %
Coverage:
84.14 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_723
ATGGCCCCCAAACGCCAGTCTTCACTCCCGCCTCAAACGAAGAAACCAAGACAGCCTCCT
GCCCTCAAGCCAACGCAGACGTCAACATCTCAGCACTTGCATAAAGGAGAAAAAGAACAG
CAAGAAGCAATTGAATATATTGATGAAGTACAAAATGAAATAGACAGACTTAATGAACAA
GCCAATGAGCAGATTTTGAAAGTAGAACAGAAATATAACAAACTCCGCCAACCATTTTTT
CAGAAGAGGTCGGAATTGATCGCCAAATCCCGTTTTTGCGTAACAACATTTGTCAACCAT
CCACAAGTGTCTGCACTGCTTGGGGAGGAGGATGAAGAGGCGCTGCATTATTTGACAAGA
GTTGAAGTGACAGAATTTGAAGATATTAAATCAGGTTACAGAATAGATTTTTATTTTGAT
GAAAACCCTTACTTCGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAGAGTGGT
GATCCATCTTCAAAGTCCACTGAAATCAAATGGAAATATGGAAAGGATTTGACGAAACAT
TCAAGTCAAACACAGAATAAAGCCAGCAGGAAGAGACAGCATGAGGAACCAGAGAGCTTC
TTCACCTGGTTTACTGACCGTTCTGATGCAGGTGCAGATGAGTTAGGAGAAGTCATCAAA
GATGATATTTGGCCAAATGCATCACAGTACTACTTGGTTCCCGATATGGATGACGAAGAA
GGGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPKRQSSLPPQMKKPRQPPAPKPGQTSTSQHLHRGAEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFV
MAPKRQSSLPPQ.KKPRQPPA.KP.QTSTSQHLH.G.EKEQQEAIE.IDEVQNEIDRLNEQA.E.ILKVEQKYNKLRQPFFQKRSELIAK...F.VTTFV
Retrocopy
MAPKRQSSLPPQTKKPRQPPALKPTQTSTSQHLHKG-EKEQQEAIEYIDEVQNEIDRLNEQANEQILKVEQKYNKLRQPFFQKRSELIAK-SRFCVTTFV


Parental protein
NHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPE
NHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWK.GKDLTK.SSQTQNKASRKRQHEEPE
Retrocopy
NHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKYGKDLTKHSSQTQNKASRKRQHEEPE


Parental protein
SFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEGE
SFFTWFTD.SDAGADELGEVIKDDIWPN..QYYLVPDMDDEEGE
Retrocopy
SFFTWFTDRSDAGADELGEVIKDDIWPNASQYYLVPDMDDEEGE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide