RetrogeneDB ID:
retro_mputfur_724
Organism:
Location:
GL896941.1:7448943-7449425 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.34 %
Coverage:
79.13 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_724
AAGATCAAAGAAACTATCATAAATCAGGAGAAACTAACCACACTGCAAGCACAAGTACGC
ATTGGTGGGAAAGGAACTGCTCCCCAAAAGATGGTTCATAGAACGCTAGAGCAGATGATA
AAAAGCTCAAGTTCTCCTTAAAGAAGTTAGGGGCAAACAGTATCTCTGTTATTGAAGAAG
TGAATGTGTTCACAAACCAAGGAACATAAATCCATTTTCACAACCTGAAAGTTCGGGAAG
CCCTGGTGGTGAACACTGTCTCCATTACAGACCATACTGACACAGATCAGCTAACAGAAA
TGCTACCCAGTATCTTCAACCAACTTGGTGCAGACAGTCTGACTAGTTCACAAAGATTGG
CTGAAGCTCTGTCCACACAGTGTGTGGATGGAAAACCATCCCTTATTCCCAGAGAGAAGG
AGGATGATGAAGTTCCAGATCTTGTGGAGAATTTTGATAAACCTTCTAAGAATGAAGCAG
AC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRT-ATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQ
..KETI.NQEKL..LQAQVRIGGKGTA....K.VHRT.A.ADDKKL.FSLKKLG.N.IS.IEEVN.FTNQGT.IHF.N.KV...L..NT..IT.H..T.Q
Retrocopy
KIKETIINQEKLTTLQAQVRIGGKGTA--PQKMVHRT/ARADDKKLKFSLKKLGANSISVIEEVNVFTNQGT*IHFHNLKVREALVVNTVSITDHTDTDQ


Parental protein
LTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
LTEMLPSI.NQLGADSLTS..RLAEAL..Q.VDGK..L...E..DDEVPDLVENFD..SKNEA.
Retrocopy
LTEMLPSIFNQLGADSLTSSQRLAEALSTQCVDGKPSLIPREKEDDEVPDLVENFDKPSKNEAD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide