RetrogeneDB ID:
retro_mputfur_730
Organism:
Location:
GL896942.1:2373252-2373820 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.98 %
Coverage:
77.96 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
YWHAQ
Parental gene aliases:
No gene alias available
Parental gene description:
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]

Genomic region (view in browser)





>retro_mputfur_730
CTATCCAAGTCATTGCTGGTCCAGAAGGTGAAGCTGGCAGGTCAGGCCAAGCGCTATGAG
ACCTGGCCACCTGCATGAATGCTATGACTGGGCAGGCATCAAGCTGTCCAATGAGGAGCA
CAGCCTGCTCCCAGTGGCCTACAAGAATATGGTCAGGGGCCACAGTTTAGCCTGGAAGGT
CATCTTGAGCATGAAACAGAAAACCAACACCAACAAGAAGTTGCAGCTGATTAAGGACTA
TTGGGAAAAAGTGGGGTCTGAGCTGAGGTCCATATGTACCACGGTGTTGGAATTGTTGGG
TCAGTATATAAGAGCCAATGCAACTAATCCAGAGAGTAAGGTCTTCTATATGAAACTGAA
GGGAAATTACTTCTGGTACCTTGCTGAAGGTGCATGTGGTGATGACTGAAAACAAATGAT
AGATAGTTCCCAGGGAGCTTACCAAGAGGCTTTTGATATAAGCAAGAAAGAGATGCAACC
CACACACCCAACTTGCTTGGGGCCAGCTCTTAACTCTTCTGTATTTTAAGAAGAGAGCCT
TACTAACCCAGAGCTTGCTGCACACCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEKTELIQKAKLAEQAERYD-DMATCMKAVTEQ-GAELSNEERNLLSVAYKNVVGGRRSAWRVISSIEQKTDTSDKKLQLIKDYREKVESELRSICTTVL
..K..L.QK.KLA.QA.RY..D.ATCM.A.T.Q.G..LSNEE..LL.VAYKN.V.G...AW.VI.S..QKT.T..KKLQLIKDY.EKV.SELRSICTTVL
Retrocopy
LSKSLLVQKVKLAGQAKRYE/DLATCMNAMTGQ/GIKLSNEEHSLLPVAYKNMVRGHSLAWKVILSMKQKTNTN-KKLQLIKDYWEKVGSELRSICTTVL


Parental protein
ELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTL
ELL..Y..ANATNPESKVFY.K.KG.YF.YLAE.ACGDD.KQ.ID.SQGAYQEAFDISKKEMQPTHP..LG.ALN.SVF..E.L.NPELA..L
Retrocopy
ELLGQYIRANATNPESKVFYMKLKGNYFWYLAEGACGDD*KQMIDSSQGAYQEAFDISKKEMQPTHPTCLGPALNSSVF*EESLTNPELAAHL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide