RetrogeneDB ID:
retro_mputfur_732
Organism:
Location:
GL896942.1:6346990-6347568 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.88 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
IL18
Parental gene aliases:
No gene alias available
Parental gene description:
interleukin 18 (interferon-gamma-inducing factor) [Source:HGNC Symbol;Acc:5986]

Genomic region (view in browser)





>retro_mputfur_732
ATGGCTACTAACCCAGTAGAAGACAACTGCATCAACTTTGTGGGAATGAAATTTATTGAC
AATATACTTTACTTTGTAGCTGAAAATGATGACAACCTGGAATCAGATTACTTTGGCAGC
TTGAACCTAGACTCTCTATCATACGAAATTTGAACGACCAAGTTCTCTTCATTAATGAGG
GCAATCAACCAGTGTTTGAAGATATGCCTGATTCTGACTGTACAGAAAGCGCATCCCATA
CCATATTTATCATAAATACGTATAAAGATAGCCTCACCAGAGGTCTGGCGGTAACCATCT
CTGTGATGTGTAATAGAATGTCTACTCTGTCCTGTAAGAACAAAACTATTTCCTTTAAGG
AAATGAGACCCCCAGACAGTATCAGCGACGAAGGGAATGACATCATATTCTTTCAAAGAA
GTGTTCCAGGACATGACGATAAGATACAATTTGAGTCTTCATTGTACCAAGGACACTTTC
CAGCTTGTAAAAGAGAGAAAGAGCTTTTCAAACTCATTTTGAAAGAAAAGGATGGAAGTG
GGGACAAATCCGTTATGTTCACTGTTCAAAACCCCAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MATNPVEDNCINFVGMKFIDNTLYFVAENDDNLESDYFG-KLEPRLSIIRNLNDQVLFVNEGNQPVFEDMPDSDCTENASHTVFIINMYKDSLTRGLAVT
MATNPVEDNCINFVGMKFIDN.LYFVAENDDNLESDYFG..LEPRLSIIRNLNDQVLF.NEGNQPVFEDMPDSDCTE.ASHT.FIIN.YKDSLTRGLAVT
Retrocopy
MATNPVEDNCINFVGMKFIDNILYFVAENDDNLESDYFG/QLEPRLSIIRNLNDQVLFINEGNQPVFEDMPDSDCTESASHTIFIINTYKDSLTRGLAVT


Parental protein
ISVMCNRMSTLSCKNKTISFKEMRPPDSISDEGNDIIFFQRSVPGHDDKIQFESSLYQGHFLACKREKELFKLILKEKDGSGDKSVMFTVQNPK
ISVMCNRMSTLSCKNKTISFKEMRPPDSISDEGNDIIFFQRSVPGHDDKIQFESSLYQGHF.ACKREKELFKLILKEKDGSGDKSVMFTVQNPK
Retrocopy
ISVMCNRMSTLSCKNKTISFKEMRPPDSISDEGNDIIFFQRSVPGHDDKIQFESSLYQGHFPACKREKELFKLILKEKDGSGDKSVMFTVQNPK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide