RetrogeneDB ID:
retro_mputfur_735
Organism:
Location:
GL896942.1:4564385-4564788 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.61 %
Coverage:
98.53 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL27
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L27 [Source:HGNC Symbol;Acc:10328]

Genomic region (view in browser)





>retro_mputfur_735
ATGGACAAGCTCAAAAAACCCAGGAGGGTGGTGCCGGTCCTGGCAGGATGTTACTCCAGG
CACGAAGTGCTCTCATGAAGAACATTGATGCTGGCACTTAAGACCCTCCCAACTGCCATG
CTCTAGAGGCCGAAATTGACCACAATCCCTGCAAAGTGATAGTTGCCATGAGCAAGAAGA
AAATTGCCAACAGGTCAAAGATCAAGTCTTTTGTGAATGTTTATAACTGTAATCACTTCA
TGCCCACATGGTACTTGGCAGATATCCCCTTGGACAAAACTGACGTCAACAAGGATATCT
TCAGAGACCCTGCTCTTAAAGACAAGGCCTGAAGAGAGGCCAAGGTCCTTATTTGAGGAG
AGGTACAGGACCCGGCAAGAACAAATGGTTCTTCCAGAAACTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGKFMKPGKVVLVLAGRYSGR-KAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKD
M.K..KP..VV.VLAG.YS........KNID.GT.D.P..HAL.A.ID..P.KV..AM.KKKIA.RSKIKSFV.VYN.NH.MPT.Y..DIPLDKT.VNKD
Retrocopy
MDKLKKPRRVVPVLAGCYSRH/RSALMKNIDAGT*DPPNCHALEAEIDHNPCKVIVAMSKKKIANRSKIKSFVNVYNCNHFMPTWYLADIPLDKTDVNKD


Parental protein
VFRDPALKRKARREAKV-KFEERYKT-GKNKWFFQKL
.FRDPALK.KA.REAKV..FEERY.T.GKNKWFFQKL
Retrocopy
IFRDPALKDKA*REAKV\LFEERYRT\GKNKWFFQKL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide