RetrogeneDB ID:
retro_mputfur_74
Organism:
Location:
GL896940.1:1785896-1786319 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.54 %
Coverage:
69.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NXT2
Parental gene aliases:
No gene alias available
Parental gene description:
nuclear transport factor 2-like export factor 2 [Source:HGNC Symbol;Acc:18151]

Genomic region (view in browser)





>retro_mputfur_74
ATGGCATCCGTGGACTTCAAGACCTACGTGGATCAGGCCTGCAGAGCTGCTGAGGAGTTT
GTGAATGTGTACTACACCACCATGGACAAACGACGGCGTCTGCTGTCCCGCCTGTACATG
GGCACGGCCACCCTGGTGTGGAACGGAAACGCTGTTTCAGGACAAGAATCCTTGAGTGAG
TTTTTTGAAATGTTACCTTCCAGTGAGTTCCAAATCAACGTGGTAGACTGCCAGCCTGTC
CATGATGAAGCCACCCCGAGCCAGACCACAGTCCTTGTTGTGATCTGTGGAACAGTGAAG
TTTGAAGGCAACAAACAACGGGACTTTAACCAAAACTTCATTCTGACTGCCCAGGCCTCA
CCCAGCAACACGGTGTGGAAGATAGCAAGTGACTGCTTCCGGTTCCAAGACTGGGCCAGC
TAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SVDFKTHVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNVVTGLEALTNFFEMLPSSEFQVNMLDCQPVHEQATQAQTTVLVVTSGTVKFD
SVDFKT.VDQACRAAEEFVN.YY.TMDKRRR.L.RLY...ATL.WNGN.V.G.E.L..FFEMLPSSEFQ.N..DCQPVH..AT..QTTVLVV..GTVKF.
Retrocopy
SVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQINVVDCQPVHDEATPSQTTVLVVICGTVKFE


Parental protein
GNKQHYFNQNFLLTAQSTPTNTVWKIASDCFRFQDWAS
GNKQ..FNQNF.LTAQ..P.NTVWKIASDCFRFQDWAS
Retrocopy
GNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDWAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide