RetrogeneDB ID:
retro_mputfur_750
Organism:
Location:
GL896944.1:9721900-9722319 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.68 %
Coverage:
79.66 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
NPM3
Parental gene aliases:
No gene alias available
Parental gene description:
nucleophosmin/nucleoplasmin 3 [Source:HGNC Symbol;Acc:7931]

Genomic region (view in browser)





>retro_mputfur_750
TTTTTCTTTGGTGATGAGCTCTCTAGCCATACCTGCCCTTTCGCCTTTAAGATTGAAGAA
GAAATAATGTGGGGCATGTGCTGGCTTTGGTCTTGCTTTGCCTCACGGAGGAGCCTAAAG
GTAAGCGTGATGTGGTAGGACTTGTGGCCTGGAACCATGACCGCCAGGAGACTGCCGTCC
CTGGGACCCACCTCAAGATGTCCTGGCAACTCAAGTTCAATTTGGTTTACTTTCAGCTCC
AACCACCTGTATCCTTCTTCTTGAAGTCCAGTTCCGGTCCTGTACAGATCACCCATCAGC
ACCAAATTATTGCTATAAGCAATGATGTTTCTGAGAAGAGAGCAAAAGAAGAGGGAAGTG
AGGAGATGGAAGCTGACTTGTGCCCCATTTTGCCTGCTAAGAAACAGAAGGACAGGCCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FFFGCELSGHTRSFTFKVEEE-DDAEHVLALTMLCLTEGAKDECNVVEVVARNHDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITG
FFFG.ELS.HT..F.FK.EEE.....HVLAL..LCLTE..K....VV..VA.NHD.QE.AVP...LK.S.Q....L..FQLQPPV.F.LKS.SGPV.IT.
Retrocopy
FFFGDELSSHTCPFAFKIEEE/NNVGHVLALVLLCLTEEPKGKRDVVGLVAWNHDRQETAVPGTHLKMSWQLKFNLVYFQLQPPVSFFLKSSSGPVQITH


Parental protein
RHQIVTISNDVSEEEESEEEGSEEEEAELCSILPAKKQGGRP
.HQI..ISNDVS.E....EEGSEE.EA.LC.ILPAKKQ..RP
Retrocopy
QHQIIAISNDVS-EKRAKEEGSEEMEADLCPILPAKKQKDRP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide