RetrogeneDB ID:
retro_mputfur_756
Organism:
Location:
GL896945.1:4584133-4585249 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.37 %
Coverage:
83.63 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
UMPS
Parental gene aliases:
No gene alias available
Parental gene description:
uridine monophosphate synthetase [Source:HGNC Symbol;Acc:12563]

Genomic region (view in browser)





>retro_mputfur_756
GAACAGGCCCGGGAGCTCGTGGAGATGGCAGCCGCGGAAGCAGCTTTGGGGTCGTTGATC
ACGGGTCTGTACGACGTGCAGGCTTTCAAGTTTGGGAACTTCGTACTGAAGAGCAGGCTC
TCTTCCCCTGTGTACATCGATCTGCGTGGCATCGTGTCTCGACCGCGTCTTCTGAGTCAG
GTTGCTGATATTTTATTTCAAACTGCCCAAAATGCAGGAATCAATTTTGACACCGTGTGT
GGAGTACCTTATACAGCTTTACCATTGGCTACAGTTATCTGTTCAACCAACCAAATTCCA
ATGCTTATTAGAAGGAAAGAAACAAAGGATTATGGTACTAAATGTCTTGTAGAAGGAGCT
GTTAATCCAGGAGAAACCTGTTTGATCATTGAAGATGTCATTACCAGTGGATCTAGTGTT
TTGGAAACTGTTGAGGTTCTTCAGAAGGAGGGCTTAAAGGTCACTGATGCCATAGTGCTG
CTGGACAGAGAGCAAGGAGGCAGAGACAAGTTGCAGGCGCATGGGATCCATCTCCACTCA
GTGTGTACATTGTCCAAAATGCTGGAGATTCTTGAGCAACAGAAAAAAATTGATGCAGAG
ATGGTTGAGAGAGTGAAGAGATTTATTCAGGAGAAGGTTTTTGTGGCAGCTAATCACAAT
GATTCACTCCTTCCTATAAACAAAGCTCCTGGAGAACTCAGCTTTGGTGCACGTGCAGAG
CTGCCTAGGATTCACCCAGTTGCGGCGAAGCTTCTCCGGCTTATGCAGAAGAAAGAGACC
AATCTCTGTCTGTCTGCTGATATTTCCGAGTCCAGAGAGCTGTTGCAGCTAGCAGATGCT
TTAGGACCCCGCATCTGCATACTCAAGACTCATGTGGATATTCTGAATGATTTTACTCTA
GATGTGATGAAGGAGTTAACGGCTCTGGCAAAACGCCATAAGTTCTTAATATTTGAAGAC
CGGAAATTTGCAGATATAGGAAACACAGTAAAAAAACAGTATGAAGGTGGTGTCTTTAAA
ATAGCTTCTTGGGCAGATCTGGTCAATGCTCATGTGGTGCCAGGCTCGGGGGTTGTGTGG
CCTGCCTTTGCAGTGGGGATGCCTGCTCATTGCGGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EQARERVEMAAAEAALGSLVTGLYDVQAFKFGNFVLKSGLSSPVYIDLRGIVSRPRLLSQVADILFQTAQNAGINFDTVCGVPYTALPLATVICSTNQIP
EQARE.VEMAAAEAALGSL.TGLYDVQAFKFGNFVLKS.LSSPVYIDLRGIVSRPRLLSQVADILFQTAQNAGINFDTVCGVPYTALPLATVICSTNQIP
Retrocopy
EQARELVEMAAAEAALGSLITGLYDVQAFKFGNFVLKSRLSSPVYIDLRGIVSRPRLLSQVADILFQTAQNAGINFDTVCGVPYTALPLATVICSTNQIP


Parental protein
MLIRRKETKDYGTKRLVEGAVNPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGRDKLQAHGIHLHSVCTLSKMLEILEQQKKIDAE
MLIRRKETKDYGTK.LVEGAVNPGETCLIIEDV.TSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGRDKLQAHGIHLHSVCTLSKMLEILEQQKKIDAE
Retrocopy
MLIRRKETKDYGTKCLVEGAVNPGETCLIIEDVITSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGRDKLQAHGIHLHSVCTLSKMLEILEQQKKIDAE


Parental protein
MVERVKRFIQENVFVAANPNDSLIPINKAPGELSFGARAELPRIHPVAAKLLRLMQKKETNLCLSADILESRELLQLADALGPRICILKTHVDILNDFTL
MVERVKRFIQE.VFVAAN.NDSL.PINKAPGELSFGARAELPRIHPVAAKLLRLMQKKETNLCLSADI.ESRELLQLADALGPRICILKTHVDILNDFTL
Retrocopy
MVERVKRFIQEKVFVAANHNDSLLPINKAPGELSFGARAELPRIHPVAAKLLRLMQKKETNLCLSADISESRELLQLADALGPRICILKTHVDILNDFTL


Parental protein
DVMKELTALAKRHEFLVFEDRKFADIGNTVKKQYEGSGVFKIASWADLVNAHVVPGSGVVRGLSEVGLPLQRG
DVMKELTALAKRH.FL.FEDRKFADIGNTVKKQYEG.GVFKIASWADLVNAHVVPGSGVV.....VG.P...G
Retrocopy
DVMKELTALAKRHKFLIFEDRKFADIGNTVKKQYEG-GVFKIASWADLVNAHVVPGSGVVWPAFAVGMPAHCG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide