RetrogeneDB ID:
retro_mputfur_759
Organism:
Location:
GL896945.1:8105868-8106338 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.38 %
Coverage:
87.01 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
NPM3
Parental gene aliases:
No gene alias available
Parental gene description:
nucleophosmin/nucleoplasmin 3 [Source:HGNC Symbol;Acc:7931]

Genomic region (view in browser)





>retro_mputfur_759
GGCGGTCTGCAAGTCCCCGCTCTAGTAATTGTGGATAGTTTTTCCTTCAGCTGTGAAGTG
TCCAGCCACACCCATTCTTTCACCTTCAAGGTAGACAAAGAGGGTGATATGGAACACTTG
CTGACTTTGACCATGCTCTGCCTCACTGAGGGGGCCAAAGAGGAGCATAATGTGACGCAA
AGAATGATAGAAGTCATGGCCAAAAACCATGACCACCAGTAGACTGAGAGTCCCTGTGAC
CAACCTCAAGTTGTCCTGCCAACTCATGCTCAGTTTGGATGATTTACAACTCCAGCCACC
TGTAACACTGTTTCTGCAGTCAGGTTCTGGCCCTGTGCAAATCAGAGGCTAGCACAAGTG
TTGTTATAAGCAATGACATTTCTGGGGAAGAAGACGGTGAAGAACGGAGTGAGGAGGAGG
AAGCTGAGCTGTGTCCCATCCTGCCTGCCAAGAACCAGTGGTGTAGGCCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GALRVPAPVTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNV----VEVVARNHDHQ-EIAVPVANLKLSCQPMLSLDDFQLQP
G.L.VPA.V..DSF.F.CE.S.HT.SFTFKV..E.D.EH.L.LTMLCLTEGAK.E.NV.....EV.A.NHDHQ....VPV.NLKLSCQ.MLSLDD.QLQP
Retrocopy
GGLQVPALVIVDSFSFSCEVSSHTHSFTFKVDKEGDMEHLLTLTMLCLTEGAKEEHNVTQRMIEVMAKNHDHQ\RLRVPVTNLKLSCQLMLSLDDLQLQP


Parental protein
PVTFRLKSGSGPVRITGRHQ-IVTISNDVSEEEESEEEGSEEEEAELCSILPAKKQGGRP
PVT..L.SGSGPV.I.G.H...V.......EE....EE.SEEEEAELC.ILPAK.Q..RP
Retrocopy
PVTLFLQSGSGPVQIRG*HK\VVISNDISGEED--GEERSEEEEAELCPILPAKNQWCRP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide