RetrogeneDB ID:
retro_mputfur_760
Organism:
Location:
GL896945.1:9188315-9188674 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
53.72 %
Coverage:
57.28 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_760
CAACTCTCCTTCAAGAAGTTAGGGGTAAACAAGATCATATCGAAGAGCTGAATGTGTTCC
TGAGCCAAGGAACAGTGAGTGGTCCACTCTCGAAGCCCTAACGTGTGGCCATCCCGGGCA
GCAAATGCCTGCGCCCTCAGAGGCCACGCTGACACAAAGCAGCTGACAGAAGTGCAAGCC
GGGTCTTCAGCCAGCGTGGTGCCAGCCGTCTGACTGGTTGAAGAAGACTGGCTGAGGCCT
TGCCCAGGTCATCTGTGCATGGAAAAGCACCCCTCACTGCCGGAGAGGAGGATGATCATA
AAGATTATCTCCCAGATCTTGTGGAGAATTTTGAGGAGGCTTCCAAGAACAAAGCAAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPS-ILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDD
Q.S.KKLGVN.I..............V.H...P.V..S.AAN.....GHA.TKQLTE........Q.GA..LT..RRLAEALP..SV.GKAPL..GE.DD
Retrocopy
QLSFKKLGVNKIISKS*MCS*AKEQ*VVHSRSPNVWPSRAANACALRGHADTKQLTEVQAG/VFSQRGASRLTG*RRLAEALPRSSVHGKAPLTAGEEDD


Parental protein
--DEVPDLVENFDEASKNEAN
..D..PDLVENF.EASKN.AN
Retrocopy
HKDYLPDLVENFEEASKNKAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide