RetrogeneDB ID:
retro_mputfur_764
Organism:
Location:
GL896945.1:4131539-4131946 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
51.89 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS3A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]

Genomic region (view in browser)





>retro_mputfur_764
ATAATAAATACTGGAAAAACACTCATGACAAGAACTCAAGGAACCAAAACTGCATCTGAT
GGCCTCAAGGGTAGCGTTTTTGAAGTGAACCTTGCTGACTGAAGAATGGTGAAGTTGCAG
GTGGAAAATTAAAGCTAACCACTGAGGGTATTTGGGGCAAAGACTGCCTGACTTACTTCC
ATGGCATGGATCTTATCTGTGACAAAATGTGCTCCATAGTCAAAAAATGGCAGCCCACAA
TTGAAGCTCATGTTAATGTCAAGACTACTGAAGATTATTTGCTTCATTTACTCTGTGCTG
GTTTTACTAAAAATTGCAACAATCAGATTTGGAACAGCTCTTATACCTAGCACCAACACA
TTTGCCAAATCCAGAAGATAAAGTAAATCATGACCCTAGAGGAGCAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD-LQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC
I.N.GKTL.TRTQGTK.ASDGLKG.VFEV.LAD.L.N.EVA..K.KL.TE...GK.CLT.FHGMDL..DKMCS.VKKWQ..IEAHV.VKTT..YLL.L.C
Retrocopy
IINTGKTLMTRTQGTKTASDGLKGSVFEVNLAD/LKNGEVAGGKLKLTTEGIWGKDCLTYFHGMDLICDKMCSIVKKWQPTIEAHVNVKTTEDYLLHLLC


Parental protein
VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQ
.GFTK..NNQI...SY..HQ...QI..K...IMT.E.Q
Retrocopy
AGFTKNCNNQIWNSSYT*HQHICQI-QKIK*IMTLEEQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide