RetrogeneDB ID:
retro_mputfur_768
Organism:
Location:
GL896945.1:12286187-12287600 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.25 %
Coverage:
94.59 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SUCLA2
Parental gene aliases:
No gene alias available
Parental gene description:
succinate-CoA ligase, ADP-forming, beta subunit [Source:HGNC Symbol;Acc:11448]

Genomic region (view in browser)





>retro_mputfur_768
GCCGAGGGGACGGGGTCTGGCTCAGAAAGGGCGGCCTCCATGTTCTACAGCCGGTTATTG
GCTACCACCGCACTTAGGAGCCGTGGGTCCCGGCCTGCGCTTCGGTCCGCCGCCCAGGTT
CTGGGAAGTTCTGGATTTTTTAACAACCATGGACTCCAAATACAGCAGCAGCAACAAAGG
AATCTCTCACTACATGAATACATGAGTATGGAATTGTTGCAAGAAGGTGGTGTCTCCATT
CCCAAAGGACATGTGGCAAAATCACCAGATGAAGCTTATGCAGTTGCCAAAAAATTAGGT
TCAAAAGATGTTGTGATAAAGGCACAGGTTTTAGCTGGTGGAAGAGGAAAAGGAACATTT
GAGAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTCTCCAGAAGAAGCAAAAGCTGTT
TCCTCACAAATTATTGGGAAAAAGTTGTTTACCAAGCAAACAGGAGAAAAAGGCAGAATA
TGCAATCAAGTATTGGTTTGTGAGAGAAGATGTCCCCGGAGAGAATACTACTTTGCAATA
ACGATGGAAAGGTCATTTCAAGGTCCTGTATTAATAGGAAGTTCTCAAGGTGGTGTCAAC
ATTGAAGATGTTGCTGCTGAGACTCCTGAGGCCATATTTAAAGAACCTATTGATATTGTA
GAAGGCATCAAGAAGGAACAAGCTGTCCGGCTTGCACAGAAGATGGGATTTCCACCTAAT
ATTGTGGATTCGGCGGCAGAAAATATGGTCAAGCTTTACAACCTTTTTCTGAAATACGAT
GCAACTATGGTAGAAATAAATCCAGTGGTAGAGGATTCAGATGGATCTGTGCTGTGCATG
GATGCAAAGATCAACTTTGATTCTAATTCAGCTTATTGCCAGAAGAAAATCTTTGACTTA
CAGGATTGGACCCAGGAAGATGAAAGGGAGGAAGGTGCAGCTAAGGCAGATCTCAACTAC
ATTGGCCTTGATGGAAATATAGGCTGTATAGTAAATGGTGCTGGTTTGGCAATGGCCACA
ATGGATATAATAAAACTTCACGGAGGGACTCCAGCGAACTTTCTTGATGTTGGTGGTGGT
GCCACAGTCCATCAAGTAACAGAAGCATTTAAGCTTATCACTTCAGATAAAAAGGTACTG
GCTATTCTGGTCAACATTTTTGGAGTCATATGGCGTGATGTTATTGCACAGGGTATAGTT
ATGGCAGTAAAGGATTTGGAAATTAAAATACCTATTGTGGTTCGGTTACAAGGTACAAGA
GTTGATGATGCTAAGGCACTGATAGCAGACAGTGGACTTAAAATTCTTGCTTGTGATGAC
TTGGATGAAGCTGCTAAAATGGTTGTAAAGCTCTCTGAAATAGTGACCTTAGCCAAGCAA
GCCCATGTGGATGTGAAATTTCAGTTGCCAATC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AEGTGSGSEMAASMFYSRLLATTALRSRGSRPALRAAAQVLGSSGFFNNHGLQIQQQQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAVAKKLG
AEGTGSGSE.AASMFYSRLLATTALRSRGSRPALR.AAQVLGSSGFFNNHGLQIQQQQQRNLSLHEYMSMELLQE.GVSIPKGHVAKSPDEAYAVAKKLG
Retrocopy
AEGTGSGSERAASMFYSRLLATTALRSRGSRPALRSAAQVLGSSGFFNNHGLQIQQQQQRNLSLHEYMSMELLQEGGVSIPKGHVAKSPDEAYAVAKKLG


Parental protein
SKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYYFAITMERSFQGPVLIGSSQGGVN
SKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQ.IGKKLFTKQTGEKGRICNQVLVCERR.PRREYYFAITMERSFQGPVLIGSSQGGVN
Retrocopy
SKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQIIGKKLFTKQTGEKGRICNQVLVCERRCPRREYYFAITMERSFQGPVLIGSSQGGVN


Parental protein
IEDVAAETPEAIFKEPIDIVEGIKKEQAVRLAQKMGFPPNIVDSAAENMVKLYNLFLKYDATMVEINPMVEDSDGSVLCMDAKINFDSNSAYRQKKIFDL
IEDVAAETPEAIFKEPIDIVEGIKKEQAVRLAQKMGFPPNIVDSAAENMVKLYNLFLKYDATMVEINP.VEDSDGSVLCMDAKINFDSNSAY.QKKIFDL
Retrocopy
IEDVAAETPEAIFKEPIDIVEGIKKEQAVRLAQKMGFPPNIVDSAAENMVKLYNLFLKYDATMVEINPVVEDSDGSVLCMDAKINFDSNSAYCQKKIFDL


Parental protein
QDWTQEDEREKGAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGI
QDWTQEDERE.GAAKADLNYIGLDGNIGC.VNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFG.I.R.DVIAQGI
Retrocopy
QDWTQEDEREEGAAKADLNYIGLDGNIGCIVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGVIWR-DVIAQGI


Parental protein
VMAVKDLEIKIPIVVRLQGTRVDDAKALIADSGLKILACDDLDEAAKMVVKLSEIVTLAKQAQVDVKFQLPI
VMAVKDLEIKIPIVVRLQGTRVDDAKALIADSGLKILACDDLDEAAKMVVKLSEIVTLAKQA.VDVKFQLPI
Retrocopy
VMAVKDLEIKIPIVVRLQGTRVDDAKALIADSGLKILACDDLDEAAKMVVKLSEIVTLAKQAHVDVKFQLPI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide