RetrogeneDB ID:
retro_mputfur_777
Organism:
Location:
GL896946.1:10053818-10054290 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.96 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Genomic region (view in browser)





>retro_mputfur_777
ATGCAGATTTTCATGAAAACCCTTACTGGGGAAGACTATCGCCATCGAGGTTGAACCCTC
AGGTACAATAAAAAATGTAAAGGCGAAGAGTCAGGGTAAGGAAGGAATTCCTCTTGATCA
GCAGAGACTGATCTTTGCTGACAAACAACTGGAAAATGGATGTACTTTATCTGACGATAT
GTAACATTTAGAAAGGGTCCACTCTTCTTCTTCTGTGTTGAGACTTCGTGGTGGTGCTAA
GAAAAGGAAGAAGTTTTCTACCACTCCTAAGAAGAGTAAACGTAAGAGAAAGAAGATTAA
ACAGGTTGTCCTGAAATACTACCAGGAGGATGAGAATGCCAAAATCAGTTGCCTTCATGG
GGAGTGCCCTTCAGATGAATGTGGTGCTGGAGTTTTTATGGCTAGCCACTTGGACAGATG
TTACTGTGGCAAATGTTGTCCATCGTATTGCTTCAACAAACTGGAAGACAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY--NIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKK
MQIF.KTLTG.KTI..EVEPS.TI.NVKAK.Q.KEGIP.DQQRLIFA.KQLE.G.TLSD.............VLRLRGGAKKRKK.S.TTPKK.K.KRKK
Retrocopy
MQIFMKTLTG\KTIAIEVEPSGTIKNVKAKSQGKEGIPLDQQRLIFADKQLENGCTLSDDM*HLERVHSSSSVLRLRGGAKKRKKFS-TTPKKSKRKRKK


Parental protein
VKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
.K..VLKYY..DEN.KIS.L..ECPSDECGAGVFMASH.DR.YCGKCC..YCFNK.EDK
Retrocopy
IKQVVLKYYQEDENAKISCLHGECPSDECGAGVFMASHLDRCYCGKCCPSYCFNKLEDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide