RetrogeneDB ID:
retro_mputfur_778
Organism:
Location:
GL896946.1:10898596-10899644 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.57 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
ST13
Parental gene aliases:
No gene alias available
Parental gene description:
suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]

Genomic region (view in browser)





>retro_mputfur_778
AGTACCTGCGCCTGGAATCGGGTCGCAACGCCAGCCGCGCCTGCCGCCTGCCACTGCCTC
TGGACCATGGACCCCCGCAAAGTGAGCGAGCTTCGGGCTTTCGTGAAAATGCGTAAGCAG
GATCCGAGCGTTTTGCACACCGAGGAAATGCGTTTCCTGCTGGAGTGGGTGGAGAGCATG
GGGGGGTAAAATACCACCTGCCACTCATAAAACTAAATCAGAAGACAGTATCAAGGAAGA
AAAACCAGATAGTAAGAAGGCGGAGGAAAACATAAAGACAGATGAACCATCAAGTGAGGA
GAGTGATCTAGAAATTGACAATGAAGGTGTGATTGAACCAGATACCGATGCCCCTCAAGA
AATGGGAGATGAAAATGCAGAGATAACTGAGGAAATGATGGATCAGGCAAATAATAAAAA
AGTGGCTGCCATTGATGCCCTAAATGATGGTGAACTACAGAAAGCCATTGACTTGTTCAC
AGATGCCATCAAACTAAATCCTCGCTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTT
CATCAAATTACAGAAGCCAAATGCTGCCATTCGAGACTGTGACAGAGCTATTGAAATAAA
TCCTGATTCAACTCAGCCTTATAAGTGGCCCGGGAAAGCACATAGACTTCTGGGCCATTG
GGAAGAAGCAGCACATGATCTTGCCCTTGCTTGCAAGCTGGATTATGATGAAGATGCTAG
TGTGATGCTGAAAGAAGTTCAACCGAGGGCCCAGAAAATTGCTGAACATCAGAGAAAATA
CGAGCGAAAACGTGAAGAGCGAGCGATCAAAGAAAGAATAGAAAGGGTTAAGAAGGCTCG
GGAAGAACACGAGAGAGCCCAGAGGGAGGAAGAAGCCAGACGACAATCAGGAGCTCAGTA
TGGCTCTTTCCCAGGTGGCTTTCCTGGGGGAATACCTGGTAATTTTCCTGGAGGAATGCC
TGGAATGGCAGGGGGGATGCCTGGAATGGCAGGAATGCCTGGGCTCAATGAAATTCTTAG
TGATCCAGAAGTTCTTGCAGCCATGCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
STRAWNRVATPAALAACHCLWTMDPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESM-GGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTDEPSSE
ST.AWNRVATPAA.AACHCLWTMDPRKVSELRAFVKM.KQDPSVLHTEEMRFL.EWVESM.GGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTDEPSSE
Retrocopy
STCAWNRVATPAAPAACHCLWTMDPRKVSELRAFVKMRKQDPSVLHTEEMRFLLEWVESM\GGKIPPATHKTKSEDSIKEEKPDSKKAEENIKTDEPSSE


Parental protein
ESDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEI
ESDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQAN.KKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEI
Retrocopy
ESDLEIDNEGVIEPDTDAPQEMGDENAEITEEMMDQANNKKVAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEI


Parental protein
NPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQSGAQ
NPDS.QPYKW.GKAHRLLGHWEEAAHDLALACKLDYDEDAS.MLKEVQPRAQKIAEH.RKYERKREER.IKERIERVKKAREEHERAQREEEARRQSGAQ
Retrocopy
NPDSTQPYKWPGKAHRLLGHWEEAAHDLALACKLDYDEDASVMLKEVQPRAQKIAEHQRKYERKREERAIKERIERVKKAREEHERAQREEEARRQSGAQ


Parental protein
YGSFPGGFPGGMPGNFPGGMPGMAGGMPGMAGMPGLNEILSDPEVLAAMQ
YGSFPGGFPGG.PGNFPGGMPGMAGGMPGMAGMPGLNEILSDPEVLAAMQ
Retrocopy
YGSFPGGFPGGIPGNFPGGMPGMAGGMPGMAGMPGLNEILSDPEVLAAMQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide