RetrogeneDB ID:
retro_mputfur_779
Organism:
Location:
GL896946.1:11471862-11472646 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
76.1 %
Coverage:
97.07 %
Frameshifts:
7
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_779
AAAATTGCTGCCCAGTCATCCCCAAGCCCCAGTCCGGCTGTTGCTGCTGCCACTGGGAAG
AGGGGGCCATGATCCAAAGGAACCAGAGCAGTTGAGAAAACTGTTTTTTGGTGGTTTGAG
CTTAGAAACTAGCTAATGTTAATTTAACAGAACATTTTGAAAAATGGGACATACAGATTG
TGTGGTGATGAGAGACCCCCCAAACAAAAACTTGCTAGGGGTTTTGGTTTTGTGACTTAC
TCTCATGTTGAAGAGGTAGATGCAGCAATGTGTTCCTGACTACACAAGGTCGATGGGTGT
GTAGTAGAACCAAGAGAGCTTTTTCTAGAGAGGATTCTGTAAAGCCTGGTACCCATCTAA
TAGTAAAGAAAATTTTTGTTGGTGGTATTAAAGAAGATACAGAAGAGTATAATTTGGGAG
AGTACTTTGAAAAGTATGGCAAGATTGAAATCATAGAAGTTATGGAAGACAGAGGAGAAA
AAAGAGGATTTGCTTTTTTAACTTTTGATGATCATGATACAGTTGATAAAATTGTTCAGA
AATATCACACCATAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAAGT
GCAGTCATTTGGATCACAAAGACGTCATGGAGGTGGATCTGACAACTTCATGGGTCATGG
AGGAAACTTTGAAGGTGGTGCTAACTTTGGCCATGGTAGAAACTTTGGTGGAAGAGGAGG
TTATGGTGATTGAGGTGGTGGCAGCAGAGGCAGTTATAGAGGAGGTGATGGTGGCAACTG
TGGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RIGPQWPPPSSAARKESAGLEG-HDPKEPEQLRKLFIGGLSFETT-DDSLREHFE-KWGTLTDCVVMRDP-QTKR-SRGFGFVTYSCVEEVDAAMCARPH
.I..Q..P..S.A.....G..G.HDPKEPEQLRKLF.GGLS.ET.....L.EHFE.K.G..TDCVVMRDP.QTK...RGFGFVTYS.VEEVDAAMC...H
Retrocopy
KIAAQSSPSPSPAVAAATGKRG\HDPKEPEQLRKLFFGGLSLETS\NVNLTEHFE/KMGH-TDCVVMRDP\QTKT\ARGFGFVTYSHVEEVDAAMCS*LH


Parental protein
KVDGRVVEP-KRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTI-NGHNC
KVDG.VVEP.KRA.SREDSVKPG.HL.VKKIFVGGIKEDTEEYNL..YFEKYGKIE.IEVMEDR..G.KRGFAF.TFDDHDTVDKIV.QKYHTI.NGHNC
Retrocopy
KVDGCVVEP/KRAFSREDSVKPGTHLIVKKIFVGGIKEDTEEYNLGEYFEKYGKIEIIEVMEDR--GEKRGFAFLTFDDHDTVDKIV-QKYHTI/NGHNC


Parental protein
EVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNG
EVKKALSKQE.QS.GSQR..GGGS.NFMG.GGNF.GG.NFG.G.NFGGRGGYG..GGGSRGSY.GGDGG..G
Retrocopy
EVKKALSKQEVQSFGSQRRHGGGSDNFMGHGGNFEGGANFGHGRNFGGRGGYGD*GGGSRGSYRGGDGGNCG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide