RetrogeneDB ID:
retro_mputfur_780
Organism:
Location:
GL896946.1:12551879-12552503 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.71 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS8
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S8 [Source:HGNC Symbol;Acc:10441]

Genomic region (view in browser)





>retro_mputfur_780
ATGGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAGACTGGGGGCAAGAGAAAGCCC
TACCACAAGAAGCGGAAGTATGAGCTGGGACGCCCGGCTGCCAACACCAAGATCGGCCCC
GCCGCATACACACAGTCCGAGTCCGGGGAGGCAATAAGAAGTACCGTGCCTTGAGGCTAG
ATGTGGGGAACTTCTCCCGGGGCTCTGAGTGTTGTACGCGCAAAACAAGGATTATTGACG
TTGTCTACAACGCATCCAACAACGAACTGGTCCGCACCAAGACCCTGGTGAAGAATTGTA
TCGTGCTCATTGACAACACACCATACCGACAGTGGTACGAATCCCACTATGCACTGCCCC
TGGGCCGCAAGAAGGGGGCCAAGCTGACGCCTGAGGAGGAAGAGATTTTAAACAAAAAAC
GATCAAAGAAAATTCAGAAGAAGTATGATGAAAGGAAAAAGAATGCCAAAATCAGCAGTC
TTCTGGAGGAGCAATTTCAGCAGGACAAGCTTCTTGCATGCCTTGCTTCATGACCAGGCC
AGTGTGGCCGAGCAGATGGCTACGTCCTAGAGGGCAAGGAACTAGAGTTCTATCTGAGGA
AAAATCAAAAGCCGGAAAGGCAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGP-RRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKN
.GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGP.RRIHTVRVRGGNKKYRALRLDVGNFS.GSECCTRKTRIIDVVYNASNNELVRTKTLVKN
Retrocopy
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGP/RRIHTVRVRGGNKKYRALRLDVGNFSRGSECCTRKTRIIDVVYNASNNELVRTKTLVKN


Parental protein
CIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYL
CIVLID.TPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQ.KLLAC.AS.PGQCGRADGYVLEGKELEFYL
Retrocopy
CIVLIDNTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQDKLLACLAS*PGQCGRADGYVLEGKELEFYL


Parental protein
R-KIKARKGK
R.KIK.RKGK
Retrocopy
R\KIKSRKGK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide