RetrogeneDB ID:
retro_mputfur_781
Organism:
Location:
GL896947.1:6158025-6158492 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
67.3 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
RPS11
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S11 [Source:HGNC Symbol;Acc:10384]

Genomic region (view in browser)





>retro_mputfur_781
ATGGCATACATTCAGACTGAGCGTGTCTACCAAAAGCAGCTGACCATCTTTCTAAAAAAG
AGGGTCCTAACTGGAGAAACTGGCAAGGAGAAGCTCCTGGGATACAATAATATCAGTCTG
GGCTTCAAGATTCCCAAGGAGGCCACAGAGAGCATGTATATTGACAAGAAGTGCCCCTTT
ATTTGTAATGTCTCTGTCCAAGGGCAGATATTGTCTGGTGTGGTGACCAACATGAAGATG
AAGAAGACCACTGTCATCCACCAAGACTACCTCCACTACATCCAAAAGTACAACCCTTTC
AAGAAACACCACAAGAACATGTCTGTGAGCCTATCCCACTGCTTCAAGGATGTCCAGATT
GGTAACGTTGTCAGTGTGCAAGTGCTGGCCCTTGAGCAAAACTGTGATGTTTCAACATGC
TCAAGGTCATGAAGCCCACTGGTGCAAAGAAGCAATTCTAGAAATTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYN
MA.IQTER.YQKQ.TIF..KKRVL.GETGKEKL..Y..NI.LGFK.PKEA.E..YIDKKCPF..NVS..G.ILSGVVT.MKM..T.VI..DYLHYI.KYN
Retrocopy
MAYIQTERVYQKQLTIFL-KKRVLTGETGKEKLLGY-NNISLGFKIPKEATESMYIDKKCPFICNVSVQGQILSGVVTNMKMKKTTVIHQDYLHYIQKYN


Parental protein
RFEKRHKNMSVHLSPCFRDVQIGDIVTV-GECRPLSKTVRFNVLKVTKAAGTKKQFQKF
.F.K.HKNMSV.LS.CF.DVQIG..V.V.....P..K...FN.LKV.K..G.KKQF.KF
Retrocopy
PFKKHHKNMSVSLSHCFKDVQIGNVVSV/ASAGP*AKL*CFNMLKVMKPTGAKKQF*KF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide