RetrogeneDB ID:
retro_mputfur_788
Organism:
Location:
GL896947.1:11241367-11241640 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
60.22 %
Coverage:
79.82 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
PPDPF
Parental gene aliases:
No gene alias available
Parental gene description:
pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) [Source:HGNC Symbol;Acc:16142]

Genomic region (view in browser)





>retro_mputfur_788
GGGGCTTCACTTCCTAACAGCGCCTGTGGAAGTGCTGAGTATCCTGGGGAAGCCATCCCT
CGCCACCCAGGTTTCCCCAAGGCCGGCCCGCTCACTGGTGGGCAAGCTGCTTTTTTGGGA
AGTCTACTCTCCCGTGCATGGCTATAGGGTTTGAGTCCCCAGAAATCTCTGACTCTGCCC
AGGCCTCCAGCAGAACGCTCACCTGTGAACTTGGCTCTGGAAGCCAGGAGGAAGCGGCCT
AGCGGCCAGCCTGGTAAAGCCAACACAGAGCCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GSTSSSSSCGSAECAGEAIPHPPGLPKADP-GHWWASFFFGKSTVPFMATVLESPERSEPPQASSGTITSD-PAPEAVRKQPGGRPGKANVGP
G.....S.CGSAE..GEAIP..PG.PKA.P..HWWAS.FFGKST.P.MA...ESPE.S...QASS.T.T....A.EA.RK.P.G.PGKAN..P
Retrocopy
GASLPNSACGSAEYPGEAIPRHPGFPKAGP/AHWWASCFFGKSTLPCMAIGFESPEISDSAQASSRTLTCE\LALEARRKRPSGQPGKANTEP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide