RetrogeneDB ID:
retro_mputfur_789
Organism:
Location:
GL896947.1:12339732-12340509 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.94 %
Coverage:
81.08 %
Frameshifts:
6
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_789
AAACTTATCTTCTATGGAAATCCCATCTCCATCTTCCAGCGGTGAGATCCCACCATCATT
AAATGGGATGGTGCTGGTACTGAGTATGTTATGGAGTCCACTGAGTCTTCACCATCATAA
AGGGGTTGGGGTTCACTTGAAGGGTGGCACCAAGAGATCATCATTTCTGCCTCTTCTGAT
GGCCCCATGTTTTTGATGGGTATGAACCAGAAGAAATATGACAACTCCCTCAAGATTATC
AGTAATGCCTCCTACACCATCAACTGCTTGCCCTTCTGGCCAAGTTCATCCACAACAACT
TTGGTATCATGAAGAGACCCATGACCACAGTCCATGCCATCCAGAAAACCATGGACAGCA
CCTCTGGGAAGCTGTGGCATGATGGCTGAGGGGTTGACCAGAACATTATCTCTACTTCTA
TAGGTGCTGCCAAGGCCATAGGCAAAGTCATTCCTGAGCGGAATGGGAAGACCACTGATG
TGACTTTCCATGTCCCACCCCCCAGTGTGTCAGTGGTGGATCCAACCTGCTACCTGGAGA
AAGCTGCCAAATATGATGACATCAAGAAGATGATAAAGCAGTTATTGGAGGGCCTCCTCA
AGGTCATCTTGGGCTACAATGACCAGGTTGTCTCCTGTGACACCCACTCTTCCATCTTCA
ATGCTGGGGTTGGCATTACTCTCAATGACCACTTTGTCAAGCTCATTACTGGTATGACAA
TTTATTTGGCTACAGCAAAAAGGTGGTGGGCTAATAGTCCACCCGGCCCTTGAGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KLVINGKSISIFQERDPANIKWGDAGAEYVVESTG-VFTTMEK-AGAHLKGGAKR-VIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCL-APLA
KL...G..ISIFQ..DP..IKW..AG.EYV.EST..VFT......G.HLKGG.KR..IISA.S.D.PMF.MG.N..KYDNSLKI.SNAS.T.NCL.A.LA
Retrocopy
KLIFYGNPISIFQR*DPTIIKWDGAGTEYVMESTE/VFTIIKG/VGVHLKGGTKR/IIISA-SSDGPMFLMGMNQKKYDNSLKIISNASYTINCL/ALLA


Parental protein
KVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKV
K.IH.NFGI....MTTVHAI...QKT.D..SGKLW.DG.G..QNII..S.GAAKA.GKVIPE.NGK.T...F.VP.P.VSVVD.TC.LEKAAKYDDIKK.
Retrocopy
KFIHNNFGIMKRPMTTVHAI---QKTMDSTSGKLWHDG*GVDQNIISTSIGAAKAIGKVIPERNGKTTDVTFHVPPPSVSVVDPTCYLEKAAKYDDIKKM


Parental protein
VKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLIS-WYDNEFGYSNRVV-DLMVHMASKE
.KQ..EG.LK.ILGY..DQVVSCD....THSS.F.AG.GI.LNDHFVKLI..WYDN.FGYS..VV..L.VH.A..E
Retrocopy
IKQLLEGLLKVILGY-NDQVVSCD----THSSIFNAGVGITLNDHFVKLIT/WYDNLFGYSKKVV/GLIVHPALEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide