RetrogeneDB ID:
retro_mputfur_791
Organism:
Location:
GL896948.1:3696340-3696622 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
64.89 %
Coverage:
69.92 %
Frameshifts:
0
Stop codons:
4


Parental gene:
Parental gene symbol:
PFDN4
Parental gene aliases:
No gene alias available
Parental gene description:
prefoldin subunit 4 [Source:HGNC Symbol;Acc:8868]

Genomic region (view in browser)





>retro_mputfur_791
AAGATCAACAAAAGAAGAACAAATTTGCGCTGAATACAAACAGAGCTGAAGGAAGAAAGA
AGTGAAAAAAAAAAACAACTCTAAAATTTAGAAGATGCTTATGAGGACGTCATGCTTGCA
GATAATGACTGCTTAAAGATACCTGACAAAATTGATGATGTTTTCATTAGTCATTCTCAA
GAAGAAATATAGGAAATGTTAAAAGAAACAGTGAAAAATTTGTAAGAAGAAATTGATGTC
AGAGAATCCAGAGTGATATTAATTCAGGGGGTATTAGCAGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KINKFARNTSRI-TELKEEIEVKKKQLQNLEDACEDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALEARVESIQRVLAD
KINK...N...I.TELKEE......QL.NLEDA.ED.MLAD.DCL.IP..I.DVFISHSQEE..EML.E..KNL.EEID..E.RV..IQ.VLAD
Retrocopy
KINKRRTNLR*IQTELKEERSXXXXQL*NLEDAYEDVMLADNDCLKIPDKIDDVFISHSQEEI*EMLKETVKNL*EEIDVRESRVILIQGVLAD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide