RetrogeneDB ID:
retro_mputfur_795
Organism:
Location:
GL896948.1:174279-174770 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.88 %
Coverage:
79.13 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_mputfur_795
AAGATGAAAGAAACTATCATGAACCAGGAGAAACTCTCCAAAGTGCAAGCACAAGTGCGC
ATTGGTGGGAAAGGAACTGCTCGCTGAAAGAAGAAGGTGGTTCATAGAACAGCTACAGCA
GATGATAAAAAAAACTTCAGTTCTCCTTAAAGAAGTTAGGGGTAAACAATATCTCTGGTA
TTGAAGAAGTGAATATGTTCACAAACCAAGGAACAGTGATCCACTTTAACAACCCCAAAG
TTCAGGCATCGCTGGCAGCGAACATTTTCACCATTACAGGCCATACTGAGACAAAGCAGC
TGACAGAAATGCTACCCAGTATCTTAAACCAACTTGGTGCAGACAGTCTGACTAGTTTAA
GAAGACTGGCTGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAGCACCACTTGCTACCG
GAGAGGATGATGATGATGAAGCTCCAGATCTTGTGGAGAATTTTGATGAAGCTTCCAAGA
ATGAAGCAAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QMKETIMNQEKLAKLQAQVRIGGKGTAR-RKKKVVHRTATADDKK-LQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETK
.MKETIMNQEKL.K.QAQVRIGGKGTAR..KK.V.......D....LQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAAN.FTITGH.ETK
Retrocopy
KMKETIMNQEKLSKVQAQVRIGGKGTAR*KKKVVHRTATADDXXX/LQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANIFTITGHTETK


Parental protein
QLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEVPDLVENFDEASKNEAN
QLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDE.PDLVENFDEASKNEAN
Retrocopy
QLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATGEDDDDEAPDLVENFDEASKNEAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide