RetrogeneDB ID:
retro_mputfur_796
Organism:
Location:
GL896948.1:6295577-6296056 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.47 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_796
ATGACCAACACAAAGGGAAAGAGGAGAGGTACCTGTTAAATGTTCTCTAGGCCTTTTAGA
AAACATGGAGTTGTTCCTTTGGCCACATACATGCGAATCTATAAGAAAGGTGATATTGCG
GACATTAAGGGAATGGGCACTGTCCAAAAGGGATGCCCCACAAATGTTACCATGGCAAAA
CTAGAAGAGTCTACAGTGTTACTCAGCATGCTTCTGGCATTGTTGTAAACAGACAAGTTA
AGGGCAAGATTCTTGCCTAGAGAATTAATGTACACATTGAGCTTATTAAACATTCAAAGA
ACCAAGATAGCTTCCTGAAGCATGTGAAGGAAGATGATCAGAAAAAGAAGGAAGCCAAAG
AGAAAGGTACTTGGGTTCAACTGAAGCATCACCCTGCTCTGCCCAGAGAAGCACATTTCA
TGAGAACCAATGAAAAGAAGTCCAAATTGCTGGAACCCATTTCCTATGAATTTATAGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKG-MPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHS
MTNTKGKRRGT..MFSRPFRKHGVVPLATYMRIYKKGDI.DIKGMGTVQKG.MPHKCYHGKT.RVY.VTQHA.GIVVN.QVKGKILA.RINV.IE.IKHS
Retrocopy
MTNTKGKRRGTC*MFSRPFRKHGVVPLATYMRIYKKGDIADIKGMGTVQKG/MPHKCYHGKTRRVYSVTQHASGIVVNRQVKGKILA*RINVHIELIKHS


Parental protein
KSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
K..DSFLK.VKE.DQKKKEAKEKGTWVQLK..PA.PREAHF.RTN.K...LLEPI.YEF.A
Retrocopy
KNQDSFLKHVKEDDQKKKEAKEKGTWVQLKHHPALPREAHFMRTNEKKSKLLEPISYEFIA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide