RetrogeneDB ID:
retro_mputfur_799
Organism:
Location:
GL896949.1:6964048-6964589 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
61.9 %
Coverage:
63.79 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_799
ATGACCCCCAAACACCAGTCTTTGATCCTGCCTCAAACAAAGAAACTGAGATTTCCTCCT
GCTCCCAAGCCAGAGGAGACATCACCCCTCTCCACTTGCCAAAGGGAGACACAGAACAGC
AAGAAGCTTCAAGAAGCACCTGAACATACTGAAGAAGTACAAGATGAAACAGATTTGCTG
AACAAGCCAGTGAGGAAATTCTGAGTAGAACAGAAATATAAGAAACTCCAAGCATTTTTT
CAAAGGCACTGAAATTGATTGCCAAAATGCCAAATTTGGGGTAACAACATCTGTCAATGA
TCCACAAGTGTCTGTACTGCTTGGGGAGGAAGAGGCATTGCATTATTTGACAAGAGTTGA
AGTGACATAATTCAAAGATATAAAATCAGGTTACAGAATAGATTTTTATTTTGATGAAAA
CCCTTACTTTGAAAATAAAATTCTCTCCAAAGACTTTCATCTACACGAGCATGGTGATCC
ATCTTCAAATTCCACTGAAATCCGGAAAGGATCTGATGAAATGTCCAAGTCAAACACAGA
A


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPKRQSSLPPQMKKPRQPPAPKPGQTSTSQHLHRGAE--KEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQ-KRSELIAKIPN-FWV
M.PK.QS...PQ.KK.R.PPAPKP..TS......R.....K..QEA.EH..EVQ.E.D.LN.........VEQKY.KL.Q.FFQ.K...LIAK.PN.F.V
Retrocopy
MTPKHQSLILPQTKKLRFPPAPKPEETSPLSTCQRETQNSKKLQEAPEHTEEVQDETDLLNKPVRK--F*VEQKYKKL-QAFFQ/KALKLIAKMPN/FGV


Parental protein
TTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQ
TT.VN.PQVS.LLGEE..EALHYLTRVEVT.F.DIKSGYRIDFYFDENPYFENK.LSK.FHL.E.GDPSS.STEI..K......K....
Retrocopy
TTSVNDPQVSVLLGEE--EALHYLTRVEVT*FKDIKSGYRIDFYFDENPYFENKILSKDFHLHEHGDPSSNSTEIR-KGSDEMSKSNTE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide