RetrogeneDB ID:
retro_mputfur_804
Organism:
Location:
GL896949.1:12206329-12206659 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.82 %
Coverage:
79.56 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL28
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L28 [Source:HGNC Symbol;Acc:10330]

Genomic region (view in browser)





>retro_mputfur_804
ATGTCTACCCACGTGCAATGGATGGTCCCCTGCAACTGCTCCAATTTCCTGATCAAGAGG
AACAAGCAGACATAGAGCAAAGAGCCCAATAAGCTGAAGGCACAAAACTCTTTCTGCTAG
AATAGGCTGCTCCAGCACAAGGCTGTGGGTGTGGAGCCTGCTATGGAAGGAAGGCAAAGC
TGTAGTGGTGGTGAAGAAACAGAGATCTGGCCAGACAAAGCCTGCCACCTCCTACAAGTG
GACCACCATGGCAAGAACACCCAGGCCACCTTCCGGTGCAACCAGGACACAATCCCCAAG
AGCAAGAACAGCCCAGATCTGCACATGGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK-GVVVVMKR-RSGQRKPATSYVRTTI-NKNARATLSSVRHMI
MS.H.QWMV..NCS.FLIKRNKQT.S.EPN.LKA.NSF..N.L...K.VGVEPA..G....VVV.K..RSGQ.KPATSY..TT...KN..AT.......I
Retrocopy
MSTHVQWMVPCNCSNFLIKRNKQT*SKEPNKLKAQNSFC*NRLLQHKAVGVEPAMEGR\KAVVVVKKQRSGQTKPATSYKWTTM/GKNTQATFRCNQDTI


Parental protein
RKNKYRPDLRMA
.K.K..PDL.MA
Retrocopy
PKSKNSPDLHMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide