RetrogeneDB ID:
retro_mputfur_809
Organism:
Location:
GL896950.1:9934433-9934820 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.44 %
Coverage:
75.14 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
GCSH
Parental gene aliases:
No gene alias available
Parental gene description:
glycine cleavage system protein H (aminomethyl carrier) [Source:HGNC Symbol;Acc:4208]

Genomic region (view in browser)





>retro_mputfur_809
ACCAGCTCTGGGCTGCTCTCCAAGCATAAGTTCACAGACAAACACGAATGGGTAACAACC
AAAAATGGTATTGGAACAGTGGGAATCAGCAATTTTGCACAAGAACTTTTGGGAGATGTT
GTTTACTGCAGTCTGACTGAAATTGGGACAAAACTGAACAAAGAGACGAGGCTGGTGCTT
TGGAAAGTGTGGAAGTGCTCGTGAACCCTATTTTCCTCTACCAGGAGAAGTCACCAAAAT
TAATGACACTCTTGCAGAAAAGCCAGGACTTGCCAGCAATCTTGTTATGAAGATGGTTGG
CTGATCAAGATAGCTCTCTGTAATCCATCAGAATTGGATGAATTAATGAGTGAAGAAGCA
TATGAAAAATACATGAAATCTACTGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TGSALLSVRKFTDKHEWITTENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQ-DEFGALESVK-AASELYSPLSGEVTEINEALAENPGLVN-KSCY
T.S.LLS..KFTDKHEW.TT.NGIGTVGISNFAQE.LGDVVYCSL.E.GTKLNK..DE.GALESV...A.E.Y.PL.GEVT.IN..LAE.PGL....SCY
Retrocopy
TSSGLLSKHKFTDKHEWVTTKNGIGTVGISNFAQELLGDVVYCSLTEIGTKLNKE/DEAGALESVE/SAREPYFPLPGEVTKINDTLAEKPGLAS/QSCY


Parental protein
EDGWLIKIALSNPSELDELMSEEAYEKYIKSIE
EDGWLIKIAL.NPSELDELMSEEAYEKY.KS.E
Retrocopy
EDGWLIKIALCNPSELDELMSEEAYEKYMKSTE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide