RetrogeneDB ID:
retro_mputfur_811
Organism:
Location:
GL896950.1:12205371-12205666 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
63.64 %
Coverage:
74.42 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
COX5B
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269]

Genomic region (view in browser)





>retro_mputfur_811
GCTGGTGGAGGGAGTGTTCCTACTGATGATGAACAGATAACTGGGCTGGAAATGGAGGCC
ATGAAGGCTGCCTGGAAAGGACTGGGCCCTTCCAATATGCTAGCCCCCAAAGCATCTTTA
GACACCAAGGAAGACCCTAATTTTGTCCCATCTGTCCCCAACAAGCAAATAGTGGGCTGC
ATCTATGAAGAAGACAAATAGTGCTCTCATCTCATGTGGTTCTGGCTGCACAAAGGTTGA
GACCCAGCAATACCCTAACTGTGGAGTTCGTCACAAGCTGGTGCCCCACCAAGTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ASRGGIPTDDDQATGLEREVMMAARKGLDPYNLLAPKAAAGTKEDPNLVPSITNKRIVGCICEEDN--STVIWFWLHKG-EAQRCPSCGTHYKLVPHQL
A..G..PTDD.Q.TGLE.E.M.AA.KGL.P.N.LAPKA...TKEDPN.VPS..NK.IVGCI.EED...S...WFWLHKG.E.Q..P.CG...KLVPHQ.
Retrocopy
AGGGSVPTDDEQITGLEMEAMKAAWKGLGPSNMLAPKASLDTKEDPNFVPSVPNKQIVGCIYEEDK*CSHLMWFWLHKG\ETQQYPNCGVRHKLVPHQV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide