RetrogeneDB ID:
retro_mputfur_812
Organism:
Location:
GL896950.1:2784934-2786104 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.15 %
Coverage:
99.74 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PDHA1
Parental gene aliases:
No gene alias available
Parental gene description:
pyruvate dehydrogenase (lipoamide) alpha 1 [Source:HGNC Symbol;Acc:8806]

Genomic region (view in browser)





>retro_mputfur_812
ATGAAGAAGATACTCACCGCCACGGTCTCCCGCGTGTGGTCTGGGGTGGCCCAGAAGCCC
GCTAGCAGAGTGCTCGTGGCATCCTGTAACTTTTCAAAAGATGCTACATTTGAAATTAAG
AAATGTGACCTTTATCGATTAGAAGAGGGTCCTCCTGACACAACAGTGCTCACCCGGGAG
GATGGGCTTAAATACTACAGGATGATGCAGACTATTCGCAGAATGGAATTGAAGGCCGAT
CAGCTGTATAAACAAAAGTTCATTCGTGGGTTCTGTCACTTGTGCGATGGTCAGGAAGCT
TGCTGCGTGGGCCTGGAGGCTGGGATAAATCCCACGGATCATGTCATCACATCCTACAGG
GCTCATGGCTTGTGCTATACTCGCGGACTTTCTGTCCGATCAATTCTCGCAGAGCTCACA
GGACGGAAGGGAGGCTGTGCTAACGGAAAGGGAGGGTCTATGCATATGTATGCAAAGAAC
TTCTATGGGGGCAACGGCATCGTTGGCGCCCAGGGACCCCTAGGAGCTGGTGTCGCCCTG
GCCTGTAAATATAAGGGCAAAAATGAGGTCTGTTTGACTCTCTACGGGGATGGTGCTGCG
AATCAGGGCCAGATAGCCGAAGCTTACAATATGGCCGCTTTGTGGAAATTACCTTGTGTT
TTCATCTGTGAGAATAACCTTTATGGAATGGGCACCTCTGCCGAGAGAGCAGCAGCCAGC
ACTGATTACTACAAGAGAGGAAATTTTATCCCTGGACTAAGGGTGGATGGAATGGATGTT
CTATGTGTTCGGGAGGCAACTAGGTTTGCAGCTGACTACTGCAGATCTGAAAAGGGGCCC
ATAGTGATGGAGCTGCTGACATACCGTTATCATGGACACAGCATGAGTGACCCTGGAGTG
AGTTATCGTACACGACAAGAAATTCAGAATGTAAGAAGTAAGAGTGATCCTATTATGCTC
CTCAAAAATAGAATGGTAGACAGTAAGCTTGCCACCATTGAAGAATTCAAGGAAATTGAT
GTGGAAGTGAGGAAAGAAATTGATGATGCAGTCCACTTTGCTACAACTGATCCTGAACCA
GCTTTGGAGGAATTAGGTCATCACATCTACTGCGATAATCCACCTTTTGAAGTTCGTGGT
ACAAGTCAGTGGATCAAGTTTAAGTCTCTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRKMLAA-VSRVL-GVAQKPASRVLVASRNFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEA
M.K.L.A.VSRV..GVAQKPASRVLVAS.NF..DATFEIKKCDL.RLEEGPP.TTVLTREDGLKYYRMMQT.RRMELKADQLYKQK.IRGFCHLCDGQEA
Retrocopy
MKKILTATVSRVWSGVAQKPASRVLVASCNFSKDATFEIKKCDLYRLEEGPPDTTVLTREDGLKYYRMMQTIRRMELKADQLYKQKFIRGFCHLCDGQEA


Parental protein
CCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAA
CCVGLEAGINPTDH.IT.YRAHG...TRGLSVR.ILAELTGR.GGCA.GKGGSMHMYAKNFYGGNGIVGAQ.PLGAG.ALACKY.GK.EVCLTLYGDGAA
Retrocopy
CCVGLEAGINPTDHVITSYRAHGLCYTRGLSVRSILAELTGRKGGCANGKGGSMHMYAKNFYGGNGIVGAQGPLGAGVALACKYKGKNEVCLTLYGDGAA


Parental protein
NQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDVLCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGV
NQGQI.EAYNMAALWKLPC.FICENN.YGMGTS.ERAAASTDYYKRG.FIPGLRVDGMDVLCVREATRFAA.YCRS.KGPI.MEL.TYRYHGHSMSDPGV
Retrocopy
NQGQIAEAYNMAALWKLPCVFICENNLYGMGTSAERAAASTDYYKRGNFIPGLRVDGMDVLCVREATRFAADYCRSEKGPIVMELLTYRYHGHSMSDPGV


Parental protein
SYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSI
SYRTR.EIQ.VRSKSDPIMLLK.RMV.S.LA..EE.KEIDVEVRKEI.DA..FAT.DPEP.LEELG.HIY...PPFEVRG..QWIKFKS.
Retrocopy
SYRTRQEIQNVRSKSDPIMLLKNRMVDSKLATIEEFKEIDVEVRKEIDDAVHFATTDPEPALEELGHHIYCDNPPFEVRGTSQWIKFKSL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide