RetrogeneDB ID:
retro_mputfur_817
Organism:
Location:
GL896951.1:10557465-10558322 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.8 %
Coverage:
86.79 %
Frameshifts:
6
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_817
ATGGTGAAGGTCAGAGTAAATGGATTTGACCGTATAGAGCACCTAGTCTCCAGGGCTACT
TTTAACTCTGGCAAAGTAGAGATTGTTGCCATCAATGATCCCTTTATTAACCTCAACTAA
ATGCTCTACAATTCCAGTGTGATTCTCCCCATGGCAAATTCAGTGCCACAGCCAAGGCTG
AAATGGGAAGATTATCATTGATAGAAAGCCAATCTCCATCTTACAATAGAGAGATCCTGC
CAACAACAAATGGGGTGATGCTGGTGCTGAGTATGAGATGAAGTCCATTAGGGTCTTCAC
CACCTTGGAGAAGGCTGGAATTACTTGAATGGTGGGTAAGAGGGTCATTATCTCTGTCCC
TTCTGCCAATGTCCCTATGTTCGTAATGGTTATGAACCATGAGAAGTAGGACAGCTTCCT
CAAGGTTGTCAACAATGCCTCCAGCACAACTGCTTGGTTCCCTGGCCAATGCCATCTATG
ACAACTTTGGCATCGTGGGGGAGAATCATAACCATAGTCCATGCTATCCTGCTACACAGA
AGACTATGGACATTCCCTCTGGGAAGCCATGGCATGATGGCTGAAAGGCTGCCCAGAACA
TCATCCCTGCTTCTATTAGAGCTGCCAAGGTTGTAGGTAAGGTCATCCCTGAACTGAATA
GGAAGTTCACTGACATGGCCTTCCATGTCCCCACCCCTAATATGTCAGTCATGGATCCAA
CCTGCTGCCTGGAGAAGGTTGCCAAATACAATGACATCAAGAGGGTGGTTAAGGAGGCAT
CAGAGGGCATGCTCATGGGCATCCTGGGCTATCCTGGGAAACAGGTTGTTTCCTGCAGCT
TTAAGAAAGACACCCAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVY-MFQYDSTHGKFNGTVKAE-NGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTG
MVKV.VNGF.RI..LV.RA.FNSGKV.IVAINDPFI.LN.M.Y..FQ.DS.HGKF..T.KAE.NGK..I..K.ISI.Q.RDPAN.KWGDAGAEY...S..
Retrocopy
MVKVRVNGFDRIEHLVSRATFNSGKVEIVAINDPFINLN*MLY/QFQCDSPHGKFSATAKAE/NGKIIIDRKPISILQ*RDPANNKWGDAGAEYEMKSIR


Parental protein
VFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTT-NCLAP-LAKVIHDNFGIVEG-LMTTVHAIT-ATQKTVDGPSGKLW
VFTT.EKAG.....G.KRVIIS.PSA..PMFVM..NHEK.D..LK.V.N....T.NCL.P.LA..I.DNFGIV.....T.VHAI..ATQKT.D.PSGK.W
Retrocopy
VFTTLEKAGIT*MVG-KRVIISVPSANVPMFVMVMNHEK*DSFLKVV-NNASST/NCLVP/LANAIYDNFGIVGE\IITIVHAIL/ATQKTMDIPSGKPW


Parental protein
RDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH
.DG..AAQNIIPAS..AAK.VGKVIPELN.K.T.MAF.VPTPN.SV.D.TC.LEK.AKY.DIK.VVK.ASEG.L.GILGY...QVVSC.F..DTH
Retrocopy
HDG*KAAQNIIPASIRAAKVVGKVIPELNRKFTDMAFHVPTPNMSVMDPTCCLEKVAKYNDIKRVVKEASEGMLMGILGYPGKQVVSCSFKKDTH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide