RetrogeneDB ID:
retro_mputfur_818
Organism:
Location:
GL896951.1:5238430-5238851 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
54.55 %
Coverage:
99.29 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
ATP5G3
Parental gene aliases:
No gene alias available
Parental gene description:
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) [Source:HGNC Symbol;Acc:843]

Genomic region (view in browser)





>retro_mputfur_818
ATGGATGCATGTGCCAAGTTCGTCTCCATCCCCTCTTGGTCAGGAACACCTCTCCGCTGT
TGAACAGATCTCTGTCTGTGGCAGTCATAAAACCACCAGAGACACTGACAGATGAGAGCC
CAACTCAGCAGCCTGGCAGCCCCTCGCCCTGACCTCACTTATTCCCACCCGCAGCTTCCT
ATCCAGCACCATTCCAAGGGACATCTACATAGCAACCAAGTTCATTGGGGCTGAGGCTAC
CATGGTAGGGGTGGCTGGCTCTGGGGCTGGAATTGGGGCTGTGTTTGGGAGCCTCATCAT
GGGTTATGCCAAGAAGCCCTCTCTGAAGCAAAAGCTGTTCTCCTACGCCATTCTGGACTC
TGTCCTCTTTGAGGCCCTGCAGCTATTTCCCCTGGTAGTGGCCTTTCTCAGCCTCTTTGC
C


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MFTCAKLACTPA-LIRAGSRVAYRPISASVLSRPEARTGEGSTVFNGAQN-GVSQLIQ-REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGS
M..CAK....P..L.R..S....R..S..V...PE..T.E..T...G........LI..R.F..S.I.RDI..A.KFIGA.A..VGVAGSGAGIG.VFGS
Retrocopy
MDACAKFVSIPS/LVRNTSPLLNRSLSVAVIKPPETLTDESPTQQPGSPS/ALTSLIPTRSFLSSTIPRDIYIATKFIGAEATMVGVAGSGAGIGAVFGS


Parental protein
LIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA
LI.GYA..PSLKQ.LFSYAIL...L.EA..LF.L.VAFL.LFA
Retrocopy
LIMGYAKKPSLKQKLFSYAILDSVLFEALQLFPLVVAFLSLFA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide