RetrogeneDB ID:
retro_mputfur_822
Organism:
Location:
GL896952.1:7206407-7207283 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.21 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
PNP
Parental gene aliases:
No gene alias available
Parental gene description:
purine nucleoside phosphorylase [Source:HGNC Symbol;Acc:7892]

Genomic region (view in browser)





>retro_mputfur_822
ATGAAGAAGCGATTTATGTATGATGATTATCAGGAAACGAGTAAATGGCTTCTGTGCTAA
ACCAAGCACCGACCTCAAGTGGCGATTATCTGTGGCTATGGGCTAGGGAATCTGGCCAAT
AAATTAACGGAGACCCAAAGCTTTGACTACAGCAAGATTCCAAACTTTCCACAAAGTACA
GTACCAGGTCACGCTGGTCAACTGGTGTTTGGATTCCTGAATGGCAAGGCCTGTGTGGTG
ATGCAGGGCAGATTCCACATGTACGAAGGCTACTCGATCTGGAAGGTGACATTCCCAGTG
AGGGTCTTCTACCTTATGGGTGTGGACACGCTAGTGGTCACCAATGCAGCTGGAGGACTC
AACCCTGAGTTTGAGGTTGGAGATATCATGCTGATCCGTGATCACCTCAACTTACCTGGC
TTCAGTGGTGTGAATCCTCTTATGGGGACCAATGATGAAAGGTTTGGACTTCGTTTCCCT
GCCATGTCCAATGCCTATGACCGGGATATGAGGCAGAAGGCTCACAGTGCCTGGAAACAG
ATGGGGGAGCAGAGAGAGCTAAAGGAAGGCACCTATGTGATGCTGGCAGGCCCCTCCTTT
GAGACTGTGGCAGAGTGTTGGCTGCTGCAGAAGCTGGGGGCAGGTGCTGTTGGCATGAGC
ATAGTTCCAGAAGTTATAGTTGCAAGGCACTGTGGACTTTGAGTCTTTGGCTTCTCCCTC
ATCACTAACAAAGTCGTCTTGGATTATGAAACCAAGGAGAAGGCCAATCATGAGGAAGTA
CTGGAGGCTGGAAGACAAGCTGCAGAAAAGTTGGAACAGTTGGTCTCTGTTCTTATGGCC
AGTATCCCACCACCTGCCAAAGCCTGTGAGCTGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEKRFTYDDYQETSKWLLCQTKHRPQVAIICGSGLGNLANKLTETQSFDYSKIPNFPQSTVPGHAGRLVFGFLNGKACVVMQGRFHMYEGYSIWKVTFPV
M.KRF.YDDYQETSKWLLC.TKHRPQVAIICG.GLGNLANKLTETQSFDYSKIPNFPQSTVPGHAG.LVFGFLNGKACVVMQGRFHMYEGYSIWKVTFPV
Retrocopy
MKKRFMYDDYQETSKWLLC*TKHRPQVAIICGYGLGNLANKLTETQSFDYSKIPNFPQSTVPGHAGQLVFGFLNGKACVVMQGRFHMYEGYSIWKVTFPV


Parental protein
RVFYLMGVDTLVVTNAAGGLNPEFEVGDIMLIRDHINLPGFSGVNPLMGPNDERFGLRFPAMSNAYDRDMRQKAHSAWKQMGEQRELKEGTYVMLAGPSF
RVFYLMGVDTLVVTNAAGGLNPEFEVGDIMLIRDH.NLPGFSGVNPLMG.NDERFGLRFPAMSNAYDRDMRQKAHSAWKQMGEQRELKEGTYVMLAGPSF
Retrocopy
RVFYLMGVDTLVVTNAAGGLNPEFEVGDIMLIRDHLNLPGFSGVNPLMGTNDERFGLRFPAMSNAYDRDMRQKAHSAWKQMGEQRELKEGTYVMLAGPSF


Parental protein
ETVAECGLLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVILDYETKEKANHEEVLEAGRQAAEKLEQFVSVIMASIPPPAKACELE
ETVAEC.LLQKLGA.AVGMS.VPEVIVARHCGL.VFGFSLITNKV.LDYETKEKANHEEVLEAGRQAAEKLEQ.VSV.MASIPPPAKACELE
Retrocopy
ETVAECWLLQKLGAGAVGMSIVPEVIVARHCGL*VFGFSLITNKVVLDYETKEKANHEEVLEAGRQAAEKLEQLVSVLMASIPPPAKACELE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide