RetrogeneDB ID:
retro_mputfur_831
Organism:
Location:
GL896953.1:5675554-5677162 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.14 %
Coverage:
99.81 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CHM
Parental gene aliases:
No gene alias available
Parental gene description:
choroideremia (Rab escort protein 1) [Source:HGNC Symbol;Acc:1940]

Genomic region (view in browser)





>retro_mputfur_831
ATGGCGGACCAGCTTCCCACAGAGTTTGATGTGGTCATCATAGGGACGGGTCTGCCTGAA
TCCATCCTTGCAGCTGCGTGTTCAAGAAGTGGCCAGAGGGTTCTGCATCTCGATTCCAGA
AGCTACTATGGAGGAAACTGGGCAAGTTTCAGCTTTTCGGGATTGCTCTCCTGGTTGAAG
GAGTATCAGCAAAACAGTGCCATTGCGGAAGAAAGTACTGCCTCGTGGCAAGGCCTGATC
CATGAAACAGAAGAAGCTGTCACTCTTCGCAAGAAGGACGAAACCATCCAACACACGGAA
GTGTTTTGTTATGCCAGTCAGGATGTGGATGACGGTGTTGACGAGATGGAGGCTCTGCAG
AAAAGTCCTTCCTCAGCAACATCCAGCACCACCCCTGACCCTCTGCATTCCGCATGCTTG
CCTGAAGAAACACACTCGTTGCATGCTGCCAGCTATGAAACGCCCGCCAAAGACACTCCA
AAAAGTGGTGGAGAAGTTTCACTGGAAGTAACTGATGTCGAGGACACCTTGGCAAAGGAA
GAGTGCTGTGGAGATGAAAGCCATATACCCGCAGTTTCAGATGGAGATGAAGATGGAAAG
AAACCTGTAGAGAAAGACCGCACTGACCAACCAAAGAGAAAGAAGATTACTTACTCTCAA
ATAGTTAAAGAAAGCAGGAGGTTTAATATTGATTTGGTATCAAAGCTGCTGTATTCTCAA
GGATTGCTAATTGATCTCTTAATCAAATCAAATGTTAGTCGTTATGCAGAATTTAAAAAC
GTCACTAGGATTCTTGCGTTCCGTGAAGGAAAAGTAGAACAGGTGCCTTGTTCCAGAGCA
GATGTCTTTAATAGCAGAGAACTCACTATGGTTGAAAAGAGGATACTGATGAAATTTCTT
ACGTTTTGTTTAGACTATGAACAACATCCTGATCAATACCAAGCTTTTGTGCAATGCTCA
TTTTCAGAGTACTTACAAACTAAAAAATTAACCCCCAACCTCCAACATTTTGTGCTGCAT
TCGATTGCAATGACAGAATCCTCTTGCAGTACCATAGATGGCCTTAAAGCAACGAAAAAC
TTCCTTCGCTGTCTTGGACGGTTTGGCAACACCCCCTTTTTATTTCCCTTGTATGGGCAA
GGAGAAATTCCCCAGTGTTTCTGCAGGATGTGTGCAGTTTTTGGTGGAATCTATTGTCTT
CGTCACAAAGTCCAATGCCTGGTAGTTGACAAAGATTCTGGAAAATGTAAAGCAATTATA
GATCACTTAGGTCAAAGAATAAATGCTAAATACTTTATTGTGGAGGACAGTTACCTTTCT
GAGGAAACCTGCTCAAATGTGCAGTATAAGCAGATCTCCAGGGCAGTGCTCATTACGGAT
CAGTCTATACTAAAGGCAGATTCAGACCAGCAGATTTCCATTTTGGTAGTGCCTCCAGTG
GAATCAGGAACATGTGCCGTTCGTGTCACCGAATTATGTTCTTCAACCATGACGTGCATG
AAAGACACCTATCTGGTACATCTGGCCTGTTCATCTTCTAAAACAGCAAGAGAAGACTTA
GAGTCAGTCGTGAAGAAGTTATTCACCCCATACAGTGAAACAGAAGTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADNLPSEFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGILSWLKEYQENSDIVNESPA-WQEQILENEEAIALSRKDKTIQHVE
MAD.LP.EFDV..IGTGLPESI.AAACSRSGQRVLH.DSRSYYGGNWASFSFSG.LSWLKEYQ.NS.I..ES.A.WQ..I.E.EEA..L..KD.TIQH.E
Retrocopy
MADQLPTEFDVVIIGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFSFSGLLSWLKEYQQNSAIAEESTASWQGLIHETEEAVTLRKKDETIQHTE


Parental protein
VFCYASQDLHEDVEEAGALQKNHASVISGNPTEAAHSACLPSEDESLCSVICEVPREQTPSSDLETALEIHDVEVTGEKEKYYDNKTCVKSGSEEETSEN
VFCYASQD....V.E..ALQK...S..S.......HSACLP.E..SL.....E.P...TP.S..E..LE..DVE.T..KE............S.......
Retrocopy
VFCYASQDVDDGVDEMEALQKSPSSATSSTTPDPLHSACLPEETHSLHAASYETPAKDTPKSGGEVSLEVTDVEDTLAKEECCGDESHIPAVSDGDEDGK


Parental protein
VPTEEDTALQPKKNRITYSQIIREGRKFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFL
.P.E.D...QPK...ITYSQI..E.R.FNIDLVSKLLYS.GLLIDLLIKSNVSRYAEFKN.TRILAFREG.VEQVPCSRADVFNS..LTMVEKR.LMKFL
Retrocopy
KPVEKDRTDQPKRKKITYSQIVKESRRFNIDLVSKLLYSQGLLIDLLIKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFNSRELTMVEKRILMKFL


Parental protein
TFCMEYEKHPDQYKAYEEITFSEYLKTQKLTPSLQYFVLHSIAMTSEKASNTIEGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYC
TFC..YE.HPDQY.A.....FSEYL.T.KLTP.LQ.FVLHSIAMT.E....TI.GLKATKNFL.CLGR.GNTPFLFPLYGQGE.PQCFCRMCAVFGGIYC
Retrocopy
TFCLDYEQHPDQYQAFVQCSFSEYLQTKKLTPNLQHFVLHSIAMT-ESSCSTIDGLKATKNFLRCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYC


Parental protein
LRHSVQCLVVDKESRKCKAIIDQFGQRIISKHFLVEDSYFSENTCSHVQYRQISRSVLITDRSVLKTDSDQQISILTVPGEEPGTFAVRVIELCPSTMTC
LRH.VQCLVVDK.S.KCKAIID..GQRI..K.F.VEDSY.SE.TCS.VQY.QISR.VLITD.S.LK.DSDQQISIL.VP..E.GT.AVRV.ELC.STMTC
Retrocopy
LRHKVQCLVVDKDSGKCKAIIDHLGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKADSDQQISILVVPPVESGTCAVRVTELCSSTMTC


Parental protein
MKGTYLVHLTCTSSKTAREDLEPVVRKLFTPYTETEI
MK.TYLVHL.C.SSKTAREDLE.VV.KLFTPY.ETE.
Retrocopy
MKDTYLVHLACSSSKTAREDLESVVKKLFTPYSETEV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide