RetrogeneDB ID:
retro_mputfur_837
Organism:
Location:
GL896955.1:9420264-9421860 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
52.82 %
Coverage:
79.76 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SLC5A1
Parental gene aliases:
No gene alias available
Parental gene description:
solute carrier family 5 (sodium/glucose cotransporter), member 1 [Source:HGNC Symbol;Acc:11036]

Genomic region (view in browser)





>retro_mputfur_837
GTACTGGAGACAGCAGACATTGCCATAGTGGCCCTGTATTTTATCCTGGTCATGTGCATT
GGTTTTTTTGCCATGTGGAAATCTAATAGAAGCACCGTGAGTGGATACTTCCTGGCGGGG
CGCTCTATGACCTGGGTAGCGATTGGTGCCTCTCTGTTTGTGAGCAATATTGGCAGTGAG
CACTTCATTGGGCTGGCAGGATCTGGAGCTGCAAGCGGATTTGCAGTGGGCGCATGGGAG
TTCAATGCCTTGCTGCTTTTGCAACTTCTGGGATGGGTTTTCATCCCGATTTACATCCGG
TCAGGGGTATACACCATGCCTGAATACTTGTCCAAGCGATTTGGTGGCCATAGGATTCAG
GTCTATTTTGCAGCCTTGTCTCTGATTCTCTATATCTTCACCAAGCTCTCAGTGGATCTG
TATTCGGGTGCCCTCTTTATCCAGGAGTCTTTGGGTTGGAACCTCTATGTGTCTGTCATC
CTGCTCATTGGCATGACTGCTTTGCTGACTGTCACCGGAGGCCTTGTTGCAGTGATCTAC
ACAGACACGCTACAGGCTCTGCTTATGATCGTTGGGGCGCTCACGCTTATGATTATTAGC
ATGATGGAGATTGGCGGGTTTGAGGAAGTTAAGAGAAGGTACATGTTGGCCTCACCCAAT
GTTACTTCCATCTTGTTGACATACAACCTTTCCAACACAAATTCTTGTAATGTCCACCCT
AAGAAAGACGCACTGAAAATGTTACGGAATCCGACAGATGAAGACGTTCCCTGGCCTGGA
TTCGTGCTTGGGCAGACCCCGGCTTCCGTGTGGTACTGGTGCGCTGACCAAGTCATCGTG
CAGAGAGTCTTAGCGGCTAAAAACATTGCTCATGCCAAAGGCTCTACGCTTATGGCTGGC
TTCCTGAAGCTTCTGCCCATGTTTATCATAGTTGTCCCAGGAATGATATCCAGAATACTG
TTTGCCGATGATATAGCTTGCATCAACCCAGAGCACTGCATGCAAGTGTGTGGAAGTCGA
GCTGGGTGCTCTAACATTGCTTACCCACGCCTGGTGATGAAGCTGGTTCCCGTGGGACTC
CGCGGCCTAATGATGGCGGTGATGATTGCCGCTCTGATGAGCGACTTGGACTCTATCTTT
AACAGTGCCAGTACCATATTCACCCTCGATGTGTACAAACTCATGCGCAGGAGTGCGAGC
TCCCGGGAACTAATGATTGTGGGGAGGATATTTGTGGCTTTTATGGTGGTGATCAGCATC
GCGTGGGTGCCCATCATCGTGGAGATGCAAGGAGGCCAGATGTACCTTTACATCCAGGAG
GTGGCGGACTACCTGACACCCCCAGTTGCGGCCCTGTTCCTTCTGGCAATCTTCTGGAAG
CGCTGCAACGAGCAAGGGGCTTTCTATGGTGGAATGGCTGGCTTTGTTCTTGGAGCGGTC
CGTTTGACACTGGCCTTTGCATACCGTGCCCCCGAATGTGACCAACCTGATAACAGGCCA
GGCTTCATCAAAGACATCCATTACATGTACGTGGCCACCGCCCTGTTCTGGGTCACAGGA
CTCATTACTGTCATTGTTAGCCTCCTCACACCACCG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IRNAADISVIVIYFVVVMAVGLWAMFSTNRGTVGGFFLAGRSMVWWPIGASLFASNIGSGHFVGLAGTGAAAGIAMGGFEWNALIWVVVLGWVFVPIYIK
....ADI.....YF..VM..G..AM...NR.TV.G.FLAGRSM.W..IGASLF.SNIGS.HF.GLAG.GAA.G.A.G..E.NAL.....LGWVF.PIYI.
Retrocopy
VLETADIAIVALYFILVMCIGFFAMWKSNRSTVSGYFLAGRSMTWVAIGASLFVSNIGSEHFIGLAGSGAASGFAVGAWEFNALLLLQLLGWVFIPIYIR


Parental protein
AGVVTMPEYLKKRFGGKRIQIYLSILSLLLYIFTKISADIFSGAIFINMALGLDLYLAIFLLLAITGLYTITGGLAAVIYTDTLQTAIMLVGSFILTGFA
.GV.TMPEYL.KRFGG.RIQ.Y...LSL.LYIFTK.S.D..SGA.FI...LG..LY....LL...T.L.T.TGGL.AVIYTDTLQ...M.VG...L....
Retrocopy
SGVYTMPEYLSKRFGGHRIQVYFAALSLILYIFTKLSVDLYSGALFIQESLGWNLYVSVILLIGMTALLTVTGGLVAVIYTDTLQALLMIVGALTLMIIS


Parental protein
FREVGGYDAFMKKYMKAIPTVVT---AENITIKEECYT-PRADSFHIFRDPLTGDLPWPGLIFGLSILALWYWCTDQVIVQRCLSAKNMSHVKAGCILCG
..E.GG.......YM.A.P.V.......N......C...P..D.....R.P...D.PWPG...G......WYWC.DQVIVQR.L.AKN..H.K......G
Retrocopy
MMEIGGFEEVKRRYMLASPNVTSILLTYNLSNTNSCNVHPKKDALKMLRNPTDEDVPWPGFVLGQTPASVWYWCADQVIVQRVLAAKNIAHAKGSTLMAG


Parental protein
YMKLLPMFLMVMPGMISRILYTEKVACTVPSECKKYCGTEVGCTNVAYPTLVVELMPDGLRGLMLSVMLASLMSSLTSIFNSASTLFTMDIYTKIRKGAS
..KLLPMF..V.PGMISRIL.....AC..P..C...CG...GC.N.AYP.LV..L.P.GLRGLM..VM.A.LMS.L.SIFNSAST.FT.D.Y...R..AS
Retrocopy
FLKLLPMFIIVVPGMISRILFADDIACINPEHCMQVCGSRAGCSNIAYPRLVMKLVPVGLRGLMMAVMIAALMSDLDSIFNSASTIFTLDVYKLMRRSAS


Parental protein
EKELMIAGRLFILVLIGVSIAWVPIVQSAQSGQLFDYIQSITSYLGPPIAAVFLLAIFWKRANEPGAFWGLVIGFLVGVSRMVTEFAYGTGSCMQPSNCP
..ELMI.GR.F.......SIAWVPI....Q.GQ...YIQ....YL.PP.AA.FLLAIFWKR.NE.GAF.G...GF..G..R....FAY....C.QP.N.P
Retrocopy
SRELMIVGRIFVAFMVVISIAWVPIIVEMQGGQMYLYIQEVADYLTPPVAALFLLAIFWKRCNEQGAFYGGMAGFVLGAVRLTLAFAYRAPECDQPDNRP


Parental protein
TIICGVHYLYFAIILFVISVIVIVVVSLFTKP
..I...HY.Y.A..LF.......V.VSL.T.P
Retrocopy
GFIKDIHYMYVATALFWVTGLITVIVSLLTPP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide