RetrogeneDB ID:
retro_mputfur_842
Organism:
Location:
GL896955.1:4864950-4865478 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.1 %
Coverage:
53.15 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_842
GGATTTGGCCATCTTGGGTGCCTGGTCACCAGGACTGCTTTTAACTCTGGCAAAGTGGAT
ATTGTTGCCATCAGTGAGCCCTTCATTGACCTCCACTTCATGGTCTACATGTTCCAGTAT
GATTCCACCCACAGCAAATTCTCTGCAATCAAGGATGAGAACGGAAAACTTGTTATCAAT
GAAAAGCCCATCTCCATCTTCCAGGATTGAGACCCTGCCAACCTCAAATAGGGCGATGCT
GGTGCTGTGTATGTTGTAGAGTGCACTGGGGTCTTCACCACCCTGGAGAAGGCTGGGGCT
CACTTGGAGGGTGGGGCCAAGAGGGTCATCATCTCTGCTCCTTCTGCTGATGCCTCCATG
TTTGTGATGCACATGAACCATGAGAAGAGTGACAACTCCATCAAGATTGTCAGCAATGCC
TCCTGTACCACCAAATGCTTGACCCCTCTGGCCAAGGTCATTCCCAACAACTTCAGCATC
GTGAAGAGACTCATGACCACAGTCCACACCATCACTGCCACCCAGAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAG
GFG..G.LVTR.AFNSGKVDIVAI..PFIDL..MVYMFQYDSTH.KF....K.ENGKLVIN.K.ISIFQ..DPAN.K.GDAGA.YVVE.TGVFTT.EKAG
Retrocopy
GFGHLGCLVTRTAFNSGKVDIVAISEPFIDLHFMVYMFQYDSTHSKFSA-IKDENGKLVINEKPISIFQD*DPANLK*GDAGAVYVVECTGVFTTLEKAG


Parental protein
AHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQK
AHL.GGAKRVIISAPSADA.MFVM..NHEK.DNS.KIVSNASCTT.CL.PLAKVI..NF.IV..LMTTVH.ITATQK
Retrocopy
AHLEGGAKRVIISAPSADASMFVMHMNHEKSDNSIKIVSNASCTTKCLTPLAKVIPNNFSIVKRLMTTVHTITATQK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide