RetrogeneDB ID:
retro_mputfur_844
Organism:
Location:
GL896955.1:9380417-9381013 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.61 %
Coverage:
51.53 %
Frameshifts:
3
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_844
CCATCATATTGAGACTTTATCAAAAACATGATTACAGGCACTTCTTAGGCTGACTGTGCT
GTCCCAATTGTTGCTGCTGGTGTTGGTGACTTTGAAGCAGGTTATCTCCAAGAATGGGCA
GACCCATGAGCATGCCCTTCTGGCTTACACACTGGATGTGAAACAACTAATTGTTGATGT
TAACAAAATGCATTCCACTAAGCCATCCTATAGCCAGAAGAGATATGGGAAATCATTAAG
GAAGTCAGCACCTACATTTAGAAAATTGGCTACAACCCTACAATTATGCCAGTTGCTGGT
TGAATGGTGAAAACATGCTGGAGCCAAGTGCTAATGTGCCTTGGTTTGAGGAATGGAAAG
CCACCCATAAAGATGGCAAGGCCAGTGGAATCACATGGCTTGAAGCTCTGCATGGCATTC
TGCCATCAACTCATCCAACTGACAAGCCCTTGTGTCTGCCCCTCCAGAACGTTTGAAAAA
TGGGTGGTATTGGTACTGCCCCTGTGGGCCTAGTGGAGAGTGGCATTCTTAAACCTGGCA
TGGTGGTCACCTTTTCTCCAGTCAATGTTACAACTGAAGTCAAGTGTGTTGAAATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAG-ISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYE-EIVKEVSTYIKKIGYNPDTVAF
P...DFIKNMITGTS.ADCAV.IVAAGVG.FEAG.ISKNGQT.EHALLAYTL.VKQLIV.VNKM.ST.P.YSQKRY..EI.KEVSTYI.KIGYNP.....
Retrocopy
PSY*DFIKNMITGTS*ADCAVPIVAAGVGDFEAG\ISKNGQTHEHALLAYTLDVKQLIVDVNKMHSTKPSYSQKRYG/EIIKEVSTYI*KIGYNP---TI


Parental protein
VPISG-WNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEV
.P..G..NG.NMLEPSAN.PWF..WK.T.KDG.ASG.T.LEAL..ILP.T.PTDKPL.LPLQ.V.K.GGIGT.PVG.VE.G.LKPGMVVTF.PVNVTTEV
Retrocopy
MPVAG/LNGENMLEPSANVPWFEEWKATHKDGKASGITWLEALHGILPSTHPTDKPLCLPLQNV*KMGGIGTAPVGLVESGILKPGMVVTFSPVNVTTEV


Parental protein
KSVEM
K.VEM
Retrocopy
KCVEM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide