RetrogeneDB ID:
retro_mputfur_853
Organism:
Location:
GL896957.1:7856439-7857043 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
72.06 %
Coverage:
99.51 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
RPL13A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L13a [Source:HGNC Symbol;Acc:10304]

Genomic region (view in browser)





>retro_mputfur_853
ATGGCGGAAGGCAGGTCCTGGTGCTCTGTGGCTGAGGCCATCTCCTGGGCTGCCTGGCAG
CCATGGTGGCCAGACAGGTGTTTCTGGGCTGGAAGGTTGTAGTCGTGTGCTGTGAGGGCA
TCCACATTTCAGGGAATTTCTGCAGAAACAAATAGAAGTACCGGGCCTTTCTCTGTAAAT
GCAGGAACACCAACTCATCCTGTGGCCCCTACACTTCCAAGTACCCAGCCAAGTCTTTTG
GTGGATAGTGAGAGGCATGCTGCCTCACAAGACTGAGTGAGGCCAGGCTGCCCTGGACCA
CCTCAAGATGTCTGATGGGATCCTGCCAGCCCATGACAAGAAAAAATGGATGGTGGTTCC
TGCTGCCCTCAAAGTGATGCACCTGAAGCTTTCAGGGAAGTTTACTTACCTGGGGTGCCT
GTCTCATGAGGTTTGCTGGAAATACCAGGTAGTAACAGCCACCCGGGAAGAGAAAATGAA
GGAGAAGGCCAAGATCCATTACCAGAAGGAAAAGCACCTAATGAGACCATGGAAATGGGC
CAAAAAGAATGCAGAGAAGAAAATTGACAAATAGACAGAGGTCCTCAAGACCTATGGACT
CCTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAEG-QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPY-HFRAPSRIFWRTVRGMLPHKTKRGQAA
MAEG.QVLVL.G.GHLLG.LAA.VA.QV.LG.KVVVV.CEGI.ISGNF.RNK.KY.AFL.K..NTN.S.GPY.HF..PS..FW..VRGMLPHKT..GQAA
Retrocopy
MAEG/QVLVLCG*GHLLGCLAAMVARQVFLGWKVVVVCCEGIHISGNFCRNK*KYRAFLCKCRNTNSSCGPY/HFQVPSQVFWWIVRGMLPHKTE*GQAA


Parental protein
LDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT
LD.LK..DGI.P..DKKK.MVVPAALKV..LK...KF.YLG.L.HEV.WKYQ.VTAT.EEK.KEKAK.HY.K.K.LMR..K.A.KN.EKKIDK.TEVLKT
Retrocopy
LDHLKMSDGILPAHDKKKWMVVPAALKVMHLKLSGKFTYLGCLSHEVCWKYQVVTATREEKMKEKAKIHYQKEKHLMRPWKWAKKNAEKKIDK*TEVLKT


Parental protein
HGLL
.GLL
Retrocopy
YGLL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide