RetrogeneDB ID:
retro_mputfur_858
Organism:
Location:
GL896960.1:3665597-3666016 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
79.02 %
Coverage:
88.05 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
PIN4
Parental gene aliases:
No gene alias available
Parental gene description:
protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Source:HGNC Symbol;Acc:8992]

Genomic region (view in browser)





>retro_mputfur_858
TTGAGGGTTCTGCTGCAAGCTTCGAAGATGCGGCCCAAGGGAAAACGTGGTTCTGGGAAA
GGGGTGAGAGGGGATCAGCCTCTGGGAGTGACAGTTCTGACAGGAAGGCACAGGGTCCCA
AAGGTGGTGACAATGCAGTAAAGGTCAGACACATTCTGTGTGGAAAAACATGGGAAAGTC
ATGGAAGCCATGGGAAAGTTAAAGTCTGAAATGGATTCAGTGAAGTGGCCACACAGTATA
GTGAAGATAAAGCCAGGCATGGAGGTGATAAGGGGTGGATGACCACAGGTTCCATGGTGG
GACCATTTCAAGAAGCAACATTTGCCTTGCATGTAAGTGGGCTGAATAAGCCTGTGTTTA
CAGACCCTCTGGTTAAGACAAAGTTTGTATATCCTATCATTATGGTTGAAGGAAGAAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LRVLPQVPKMPPKGKSGSGKGGKG-GAASGSDSSDKKAQGPKGGGSAIKVRHILC-EKHGKIMEAMEKLKSGMR-FNEVATQYSEDKARQGGDLGWMTRG
LRVL.Q..KM.PKGK.GSGKG..G.G.ASGSDSSD.KAQGPKGG..A.KVRHILC.EKHGK.MEAM.KLKS.M..F.EVATQYSEDKAR.GGD.GWMT.G
Retrocopy
LRVLLQASKMRPKGKRGSGKGVRG/GSASGSDSSDRKAQGPKGGDNAVKVRHILC\EKHGKVMEAMGKLKSEMD/FSEVATQYSEDKARHGGDKGWMTTG


Parental protein
SMVGPFQEAAFALPISGLDKPVFTDPPVKTKFGYHIIMVEGRK
SMVGPFQEA.FAL..SGL.KPVFTDP.VKTKF.Y.IIMVEGRK
Retrocopy
SMVGPFQEATFALHVSGLNKPVFTDPLVKTKFVYPIIMVEGRK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide