RetrogeneDB ID:
retro_mputfur_859
Organism:
Location:
GL896960.1:2957893-2958580 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.49 %
Coverage:
98.71 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
CACYBP
Parental gene aliases:
No gene alias available
Parental gene description:
calcyclin binding protein [Source:HGNC Symbol;Acc:30423]

Genomic region (view in browser)





>retro_mputfur_859
ATGGCCCCAGCTTTGGAAGAGCTACAGAAGGATATAGAAGGGGTAAAGTTGCTGCTGGAA
AAGGCTACTGGAAAAAGAGTATGTGATGCCTTCACAACTGAAAAACCCAAGATTGGGACA
GAAATCAAGAACAAGATGCAGTGGAAATCAGAGAGAAGAGCAGAACTCTTTGACAATGCA
AAGGCAGCCACTGTTGCTCCTCTCGTTACAATGGAATGTACAGAGAAAATCAGTAATTAT
GAATGGGATCAGTGAGACAGGTTTGTGAAAATCCACATTACCTTAACTGGAGTTCATCAA
GTCCCCCCCGAGAACATGCAGGTGCATTTTGCAGAGAGGTCATTTGATCTTTTGGTAAAG
AATCTACATGGGAAGAGTTACTCCATGACTGGGCACAATCTCTTAAAACCCATCTCTGTG
GAAGGTGGTTCAGAAACAGTCAAGACAGATACAGTTCTTATTTTACGTAGGAAGAAGGCA
GGAAACACGTGGTGGGACTACCCAACTTAGGTTGAAAAAGAAGGCAAAGAGAAGCAAGAG
CCCTCCTACGACACTGAAACGGATGCTAGTGATGGATTGATGAGTGTTCTGAAGAAAATT
TATGAAAATGGAGATGATGATATGAAGCAAACCATTAATACAGCCTGGGTGGAATCAGGA
GAGAAGCAAACTGAAGGAGACACAGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LSSVLTQLQKDLEEVKVLLEKTSRKRVRDALTAEKSKIETEIKNKMQQKSQRKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQ
....L..LQKD.E.VK.LLEK...KRV.DA.T.EK.KI.TEIKNKMQ.KS.R.AEL.DN.K.A.V....T...T.KISNY.WDQ.D.FVKI.ITLTGVHQ
Retrocopy
MAPALEELQKDIEGVKLLLEKATGKRVCDAFTTEKPKIGTEIKNKMQWKSERRAELFDNAKAATVAPLVTMECTEKISNYEWDQ*DRFVKIHITLTGVHQ


Parental protein
VPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKAENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKI
VP.EN.QVHF.ERSFDLLVKNL.GKSYSM...NLLKPISVEG.S..VKTDTVLIL.RKKA.NT.WDY.T.VEKE.KEK..PSYDTETD.S.GLM.VLKKI
Retrocopy
VPPENMQVHFAERSFDLLVKNLHGKSYSMTGHNLLKPISVEGGSETVKTDTVLILRRKKAGNTWWDYPT*VEKEGKEKQEPSYDTETDASDGLMSVLKKI


Parental protein
YEDGDDDMKRTINKAWVESREKQAKGDTE
YE.GDDDMK.TIN.AWVES.EKQ..GDTE
Retrocopy
YENGDDDMKQTINTAWVESGEKQTEGDTE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide