RetrogeneDB ID:
retro_mputfur_860
Organism:
Location:
GL896960.1:8862298-8862909 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.2 %
Coverage:
64.15 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
TYMS
Parental gene aliases:
No gene alias available
Parental gene description:
thymidylate synthetase [Source:HGNC Symbol;Acc:12441]

Genomic region (view in browser)





>retro_mputfur_860
GATGCCAATGGGTCTCGAGACTTCTAGGACAGCTTGGGGTTCTCCAACAGAAAAGAAGGG
GATTTAGGCCCAGTTTATGTCTTTCAGTGGAAGCATTTTGGGGCAGAATACATAGATAAG
GATTCAGATTATTCAGGTCAAGGAGTAGACCAACTGCAAAAGGTCATTGACACAATCAAA
CCAACCCCAACGACAGAAGAATCATCCTGAGTGGCTGGAATCCAAAAGATATTCCTCTGA
CGGCCCTCCCTCCGTGCCATGCCCTCTGCCAGTTTTGCGTGGTGAATGGTGAACTGTCCT
GCCAGCTGTACCAGAGGTCAGGGGACATGGGCCTGGGCGTGCCCTTCAACATCGCCAGCT
ATGCCCTGCTCACCTACATGATTGCACACATCACAGGACTAAAGCCAGGTGACTTCGTAC
ATACTTTGGGAGATGCACATATTTACCTGAATCACATTGAGCTGCTGAAAATGCAGCTTC
AGCAAGAACCAAGGCCTTTCCCGAAGCTCAAAATCCTTCGAAAAGTTGAGACAATGGATG
ACTTCAAGGCTGAAGACTTTCAGATTGAGGGGTACAGTCCTCAACTGACTATTGAAATGG
AAATGGCTGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DANGSRDFLDSLGFSNREEGDLGPVYGFQWRHFGAEYIDKDSDYSGQGVDQLQKVIDTIK-TNPDDRRIILCGWNPKDLPLMALPPCHALCQFYVVNGEL
DANGSRDF.DSLGFSNR.EGDLGPVY.FQW.HFGAEYIDKDSDYSGQGVDQLQKVIDTIK.TNP.DRRIIL.GWNPKD.PL.ALPPCHALCQF.VVNGEL
Retrocopy
DANGSRDF*DSLGFSNRKEGDLGPVYVFQWKHFGAEYIDKDSDYSGQGVDQLQKVIDTIK/TNPNDRRIILSGWNPKDIPLTALPPCHALCQFCVVNGEL


Parental protein
SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIEPLKMQLQREPRPFPKLKILRKVETIDDFKAEDFQIEGYSPHPTIK
SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIE.LKMQLQ.EPRPFPKLKILRKVET.DDFKAEDFQIEGYSP..TI.
Retrocopy
SCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFVHTLGDAHIYLNHIELLKMQLQQEPRPFPKLKILRKVETMDDFKAEDFQIEGYSPQLTIE


Parental protein
MEMAV
MEMAV
Retrocopy
MEMAV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide