RetrogeneDB ID:
retro_mputfur_864
Organism:
Location:
GL896961.1:8044372-8044929 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.05 %
Coverage:
76.33 %
Frameshifts:
3
Stop codons:
5


Parental gene:
Parental gene symbol:
YWHAZ
Parental gene aliases:
No gene alias available
Parental gene description:
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855]

Genomic region (view in browser)





>retro_mputfur_864
CAGAGGGCCAAACTAGCTGAACAGACCAAGTGATATGATTACATGGCAGCCGGCATGAAG
CCTGTAACTGAACGAAAAGCTGAATTATTCAATGAGGAGAGGAATCTTCTCTCAATTGTT
TATGAAAGTGTTGTGGGAGCCCAAAGGTCATATTGGAGGGTCATCTCAAGTATTGAGCAA
AAGATGGAAGGTGCTGAGGAAAACAGCAGATGATCTGAGAATACAGAGAGAAAACTGAGG
CTGAGCTAAAAGATGTCTGCAATGATGTACATTCTGTTTTGGGAAAGTTTTTGATTCCCA
ACGGTTCACAGGTGAGAAAAGTCTTCTATTTGAAAATGAAGGGAGATGACTACTTTTACT
AGCCGGGGTTTCTGCGGATGATAATTAGAAGGAGATTATGAATCAGTCATAACAGACATA
CCAAGAAGCTTTTGAAATCAGCAAAAAGGAAGTGCAACCAACACATCCTATCAGGTTGGG
TCTGGCCCTTAACCTATCTGTGTTGTTATGATAAGATTCTGCGCTCCCTATAGAAAGCCT
GCTCTCTTGCAAAGACA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEK-KQQMAREYREKIETELRDICNDVLSLLEKFLI
Q.AKLAEQ...YD.MAA.MK.VTE..AEL.NEERNLLS..Y..VVGA.RS.WRV.SSIEQK.EGAE..KQQM..EYREK.E.EL.D.CNDV.S.L.KFLI
Retrocopy
QRAKLAEQTK*YDYMAAGMKPVTERKAELFNEERNLLSIVYESVVGAQRSYWRVISSIEQKMEGAEE/KQQMI*EYREKTEAELKDVCNDVHSVLGKFLI


Parental protein
PNASQAESKVFYLKMKGDYYRY-LAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVF-YYEILNSPEKACSLAKT
PN.SQ...KVFYLKMKGD.Y.Y.LA.V.A.D..K.I..QS.Q.YQEAFEISKKE.QPTHPIRLGLALN.SV..Y..IL.S..KACSLAKT
Retrocopy
PNGSQVR-KVFYLKMKGDDYFY/LAGVSADDN*KEIMNQS*QTYQEAFEISKKEVQPTHPIRLGLALNLSVL\YDKILRSL*KACSLAKT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide