RetrogeneDB ID:
retro_mputfur_867
Organism:
Location:
GL896962.1:9976337-9976862 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.0 %
Coverage:
72.02 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
YY2
Parental gene aliases:
No gene alias available
Parental gene description:
YY2 transcription factor [Source:HGNC Symbol;Acc:31684]

Genomic region (view in browser)





>retro_mputfur_867
CAACAGACTGTCAGAGAGAATTCACAGTTTAAGTATTCTGAGTATGCAATGGGCAAGAAG
CTTCCTCCTGGAGGAGCACCCAGCATTGACCTACCAAATCCTAAACAGTCTGCAGAATTT
GCTAGAAAGAAGCCAGCAAGAAATAAGGAATATGAGGCTCCAGAAAGAATTGCTTGTCCT
TACAGTGGATGCCCAAAAAAGGTAAAGAATAGAGCTTCCCTGAGAAAGCATCTCCTTGTC
CATGGTCCTCGTGATCACGTATGTGCAGAATGTGGGAAAGCATTCAATGAGAGTTCGAAA
CTAAAAAGACATTTTCTTGTTCATACTGGAGAGAAGCCATTTCAGTGCACTTTTGAGGGG
TGTGGAAAACGCTTTTCCCTAGACTACAATTTGCGTACGCATGTCCGCATCCACACTGGG
GAGAAACGTTTTGTGTGTCCCTTTGAAAGTTGTCACAAGAGGTTTACTCAGTCAAATAAT
ATGAAAATTCACGTCTTAACTCATGGAAAGACCAACACAAATCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSK
.Q...ENS...YSEY..GKKLPPGG.P.IDL..PKQ.AEFAR.KP...KE..AP..IACP..GC.K........RKHL..HGPR.HVCAECGKAF.ESSK
Retrocopy
QQTVRENSQFKYSEYAMGKKLPPGGAPSIDLPNPKQSAEFARKKPARNKEYEAPERIACPYSGCPKKVKNRASLRKHLLVHGPRDHVCAECGKAFNESSK


Parental protein
LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ
LKRH.LVHTGEKPFQCTFEGCGKRFSLD.NLRTHVRIHTG....VCPF..C.K.F.QS.N.K.H.LTH.K...NQ
Retrocopy
LKRHFLVHTGEKPFQCTFEGCGKRFSLDYNLRTHVRIHTGEKRFVCPFESCHKRFTQSNNMKIHVLTHGKTNTNQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide