RetrogeneDB ID:
retro_mputfur_870
Organism:
Location:
GL896962.1:4566107-4566621 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.16 %
Coverage:
98.29 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
TPT1
Parental gene aliases:
No gene alias available
Parental gene description:
tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]

Genomic region (view in browser)





>retro_mputfur_870
ATGATCATCTACTGGGACCTCATCAGCCATAATGAGATGTTCTCTGACATTTACAAGATC
TGGGAGATCGCGGGTGGGCTGTGCCATGAGGTGGAGGTGAAGGTGGTCAGCAGGACAGAG
GGTAACACTGATGACTTGCTCATTGGTGGAAATGCCTTCATTGACGGCCGGAAGGCAAAG
ATACAGAAATCACAGTCATCCCTGGTGTGCTATTGTCATGAACCATCGTTTGCAGGAAAC
CAGCTTCACAAAAGAAGCCTGCAAGAAGTACATCAAAGATTACATGAAATCAATCAAAGG
CAAACTTGAGGAACAGAGCCCAGAAAGAGTAAACCCTTTTATGACAGGAGCTGCAGAACA
CATCAAGCACATCTTTGCTAATTTGAAAAACTGCAAGTTCTTTATTGGTAAAAACATGAA
TCCAGATGGCCTGGCTGCTCTGCTGGACTACCATGAGGGTGGTATGACCCTATATAGGAT
TCTCGTTAAGGACGGTTTAGAAATGGAGAAATGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEG-PEGEGTESTVITGV-DIVMNHHLQETSFTKEAYKKYIKDYMKS
MIIY.DLISH.EMFSDIYKI.EIA.GLC.EVE.K.VSRTEGN.DD.LIGGNA...G.PEG..TE.TVI.GV..IVMNH.LQETSFTKEA.KKYIKDYMKS
Retrocopy
MIIYWDLISHNEMFSDIYKIWEIAGGLCHEVEVKVVSRTEGNTDDLLIGGNAFIDG/PEGKDTEITVIPGV/AIVMNHRLQETSFTKEACKKYIKDYMKS


Parental protein
IKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC
IKGKLEEQ.PERV.PFMTGAAE.IKHI.AN.KN..FFIG.NMNPDG..ALLDY.E.G.T.Y.I..KDGLEMEKC
Retrocopy
IKGKLEEQSPERVNPFMTGAAEHIKHIFANLKNCKFFIGKNMNPDGLAALLDYHEGGMTLYRILVKDGLEMEKC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide