RetrogeneDB ID:
retro_mputfur_874
Organism:
Location:
GL896963.1:4744285-4744873 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
79.7 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
Apool
Parental gene aliases:
No gene alias available
Parental gene description:
apolipoprotein O-like [Source:MGI Symbol;Acc:MGI:1915367]

Genomic region (view in browser)





>retro_mputfur_874
CTCCCCACACAGACTGCACCACCTCTGCAGTTTAAACATGTAGAAGAGCAGCCTGGTCAT
TTACAAATGGGCTTAGCATCCATCTGCACTACAACTGGTCATTATATTGGCTGGTGCAAT
AGTGTTTATGTGTTTGTGAAAAATGGAATAATGGGTACAGTTCAATTTGGAAAAGATGCA
TATATCTCTCTGAAGGATCCACCTCAACCCAAAAGTTGGAGAGATTACAGTTTCAGGATT
GGCCGGTGTGGTTTCAGCAAGAAAAGGTTCTAGGTTTAAGAAAATTGCTTACCCACTGGG
ACTGGCCTCTTTAGGAGCAACTGTTTGCTACCCAGTTCAGTCAGTAATAATTGCAAAGGT
AACTGGGAAAAAGGCATATCCTACAAGCCAGCAAATTTATGAAGCAGTTAAATCACTGTG
GACAAAAATCAACAAAGAGTCATTTCCTAAACCTAAAGAAAAATCTAAGTTAGGAAATTC
TGCTGCAACAGAACTACCTGCCAAAACAACAGACAGCTGAAATACTCAGTGCCCTTGCCC
ACGGAACTCAGCTCTGAAACAAAGTCACAATCAGAATCCACCTCTGGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LPIYTAPPLQSKYVEEQPGHLQRGFASIRSTTGHYIGWCKGVYVFMKNGIMDTVQFGKDAYIYLKNPPQDFLPK-LGVITVSALAGLVSARKXSRFKKIA
LP..TAPPLQ.K.VEEQPGHLQ.G.ASI..TTGHYIGWC..VYVF.KNGIM.TVQFGKDAYI.LK.PPQ...PK..G.ITVS.LAG.VSARK.SRFKKIA
Retrocopy
LPTQTAPPLQFKHVEEQPGHLQMGLASICTTTGHYIGWCNSVYVFVKNGIMGTVQFGKDAYISLKDPPQ---PK\VGEITVSGLAGVVSARKGSRFKKIA


Parental protein
YPLGLATLGATVCYPVQSVIIAKVTGEKAYTVSQQIYGAVKSLRTKSNKEESLPKPKEKSKLGNSATLEIPEKTTDS-LKYSVSLPAELSSETKTKSEST
YPLGLA.LGATVCYPVQSVIIAKVTG.KAY..SQQIY.AVKSL.TK.NK.ES.PKPKEKSKLGNSA..E.P.KTTDS.LKYSV.LP.ELSSETK..SEST
Retrocopy
YPLGLASLGATVCYPVQSVIIAKVTGKKAYPTSQQIYEAVKSLWTKINK-ESFPKPKEKSKLGNSAATELPAKTTDS/LKYSVPLPTELSSETKSQSEST


Parental protein
SG
SG
Retrocopy
SG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide