RetrogeneDB ID:
retro_mputfur_89
Organism:
Location:
GL896911.1:16070452-16071844 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.62 %
Coverage:
86.79 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:UniProtKB/TrEMBL;Acc:G9KQ46]

Genomic region (view in browser)





>retro_mputfur_89
CGGCGGCCTGGTATGTCACCAGGGAGCCGGATGCCCATGGCTGGCTTGCAGGTGGGACCT
CCCGCTGGATCTCCCTTCGGCACAGCTGCTGCACTTCGATCTGGGATGCCGCCCACCATG
ATGGACCCATTCCGCAAACGCCTGCTTGTGCCCCAGGCCCAGCCCCCAATGCCTGCCCAG
CGCCAGGGGTTGAAAAGGAGGAAGATGGCAGATAAGGTTCTACCTCAGCGAATTCGGGAG
CTTGTCCCAGAGTCTGAGGCGTACATGGATCTCTTGACTTTTGAGCGGAAGCTGGACCAG
ACCATTGCCCGAAAGCGTATGGAGATCCAAGAGGCCATCAAAAAGCCTCTGACGCAAAAA
CGAAAGCTGCGGATCTATATGATCTATATTTCCAATACGTTCAGTCCCAGCAAGGCAGAA
GGTGACACTGCGGGGACCACAGGGCCCCCCGGGGGAACCCCCGCAGGGGACAAAGTGGCT
TCCTGGGAACTCCGAGTGGAGGGAAAACTGCTGGATGATCCCAGCAAACAGAAGAGGAAG
TTTTCTTCGTTCTTCAAGAGCCTCGTCATTGAGCTGGACAAGGAGCTGTATGGACCTGAC
AACCACCTGGTGGAGTGGCACCGGATGCCCACCACCCAGGAAACTGATGGCTTCCAGGTG
AAACGGCCTGGAGACCTCAACGTCAAGTGCACCCTCCTGCTCATGCTGGATCATCAGCCT
CCCCAGTACAAGTTGGACGCCCGACTGGCAAGGCTGCTGGGGGTGCACACACAGACCAGG
GCGGCCATCATGCAGGCCCTATGGCTTTATATCAAACACAACCAGCTGCAGGATGGGCAC
GAGCGCGAGTACATCAACTGCAACCGGTACTTCCGCCAGATCTTCAGTTGTGGCCGCCTT
CGTTTCTCTGAGATTCCCATGAAGCTGGCTGGGTTGCTGCAGCATCCAGACCCCATTGTC
ATCAACCATGTCATTAGTGTAGACCTGAACGATCAAAAGAAGACCGCATGTTATGACATT
GACGTGGAGGTGGACGACCCACTGAAGGCCCAGATGAGCAATTTTCTGGCCTCTACCACC
AATCAGCAGGAGATCGCCTCCCTTGATGTCAAGATCCATGAGACCATTGAGTCCATCAAC
CAGCTGAAGACCCAGAGGGATTTCATGCTCAGCTTTAGCACCGACCCTCAGGACTTCATC
CAGGAATGGCTCCGCTCCCAGCGCCGAGACCTCAAGATCATCACAGATGTGATCGGGAAT
CCGGAAGAGGAGAGACGAGCTGCTTTCTACCATCAGCCGTGGGCCCAGGAAGCAGTGGGG
AGGCGCATTTTTGCCAAGGTGCAGCAGCGAAGGCAGGAACTGGAACAGGTGCTGGGAATC
CGCTTGACCTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QRPGMSPGSRMPMAGLQVGPPAGSPFGTAAALRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQ
.RPGMSPGSRMPMAGLQVGPPAGSPFGTAAALR.GMPPTMMDPFRKRLLVPQAQPPMPAQR.GLKRRKMADKVLPQRIRELVPES.AYMDLL.FERKLDQ
Retrocopy
RRPGMSPGSRMPMAGLQVGPPAGSPFGTAAALRSGMPPTMMDPFRKRLLVPQAQPPMPAQRQGLKRRKMADKVLPQRIRELVPESEAYMDLLTFERKLDQ


Parental protein
TIARKRMEIQEAIKKPLTQKRKLR---IYISNTFSPSKAEGDTAGTTGPPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPD
TIARKRMEIQEAIKKPLTQKRKLR...IYISNTFSPSKAEGDTAGTTGPPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPD
Retrocopy
TIARKRMEIQEAIKKPLTQKRKLRIYMIYISNTFSPSKAEGDTAGTTGPPGGTPAGDKVASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPD


Parental protein
NHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRL
NHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLD.RLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRL
Retrocopy
NHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDARLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRL


Parental protein
RFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFI
RFSEIPMKLAGLLQHPDPIVINHVISVD.NDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFI
Retrocopy
RFSEIPMKLAGLLQHPDPIVINHVISVDLNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFI


Parental protein
QEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
QEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGR.IFAKVQQRRQELEQVLGIRLT
Retrocopy
QEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRRIFAKVQQRRQELEQVLGIRLT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide