RetrogeneDB ID:
retro_mputfur_891
Organism:
Location:
GL896966.1:6225021-6225510 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.64 %
Coverage:
82.32 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
FCF1
Parental gene aliases:
No gene alias available
Parental gene description:
FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220]

Genomic region (view in browser)





>retro_mputfur_891
GAAAAGAAAGATCCCAGTGCACTCAAGGAAAGAGAAGTCCCCCAACATCCTTCCTGCTTA
TTCTTCCAATATAACACACAGCTGGGCCCACCTTACCACATCCTGGTTGATACCAACTTT
ATCAACTTTTCCATTAAAGCCAAACTTGACTTAGTACAGTCAATGATGGATTGTCTTTAT
GCCAAGTGTATCCCTTGTATAACTGACTGTGTAATGGCTGAAATTGAAAAACTGGGGCGG
AAGTATCGAGTGGCTCTAAGGATTGCCAAGGATCCAAGATTTGAACAATTACCGTGCACA
CACAAAGGAACCTATGCAGATGACTTCTTAGTGCAGAGAGTAACTCAGCACAAGTGTTAC
ATTGTGGCCAAAATTGACGGAGACCTTAATCGAAGGATCCGGAAGATTCCTGAAGTTCCC
ATCATGTACATTTCTAAACATAGGTACAACATTGAGTGGGTGCCGGATGATTATGGAGCC
CCTTGGTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCT
EKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLG.KYRVALRIAKDPRFE.LPCT
Retrocopy
EKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGRKYRVALRIAKDPRFEQLPCT


Parental protein
HKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISNHRYNIERMPDDYGAPRF
HKGTYADD.LVQRVTQHKCYIVA..D.DL.RRIRKIP.VPIMYIS.HRYNIE..PDDYGAP.F
Retrocopy
HKGTYADDFLVQRVTQHKCYIVAKIDGDLNRRIRKIPEVPIMYISKHRYNIEWVPDDYGAPWF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide