RetrogeneDB ID:
retro_mputfur_899
Organism:
Location:
GL896967.1:7494151-7494612 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
72.43 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RAN
Parental gene aliases:
No gene alias available
Parental gene description:
RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846]

Genomic region (view in browser)





>retro_mputfur_899
CCATACCAACAGAAGACTTATGGAGTTCAATGTATGGAGAAATTTGGTGGGCTGAGAGTT
GGCTATTACATCCAAGCCCAGGGTGCCATTATAATGTCTGATGTAACATCAAGGGTTACT
TGTGAGAAGGTGCCCAGCTGGCATAGAGATCTGGTACAAGTATGGGAAAACATTCCCATA
CTGCTGTGTGGCAACAAAGTGGACACGAAGGACAGGAAAGTTAAGGTGAAGTCTATTATC
TTCCACTGAAAGAAGAACTATTAGTACTGTAACATTCTGCCGAAAGTAACTACAACTTTG
AAAAGTCCCTCCTGTGGCTTGTTAGAAAATTAATTGGAGACCCTAACTTGGAGGTGGTCT
CCATGCCTGCTCATGCCCCACCAGAGGTTGTCACGGAGCCAATTTCAGCAGCCCAGCATG
AGCATGATCTAGAACTTGCTCAGACAACGGCTCTCCTGGAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQQYYDISAKSNYN
P...........EKFGGLR.GYYIQAQ.AIIM.DVTSRVT...VP.WHRDLV.V.ENIPI.LCGNKVD.KDRKVK.KSI.FH.KKN...Y..I..K....
Retrocopy
PYQQKTYGVQCMEKFGGLRVGYYIQAQGAIIMSDVTSRVTCEKVPSWHRDLVQVWENIPILLCGNKVDTKDRKVKVKSIIFH*KKN-Y*YCNILPKVTTT


Parental protein
FEKP-FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPD
...P..LWL.RKLIGDPNLE.V.MPA.APPEVV..P..AAQ.EHDLE.AQTTAL.D
Retrocopy
LKSP/LLWLVRKLIGDPNLEVVSMPAHAPPEVVTEPISAAQHEHDLELAQTTALLD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide