RetrogeneDB ID:
retro_mputfur_9
Organism:
Location:
GL897040.1:1401779-1402247 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.14 %
Coverage:
90.85 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NCBP2
Parental gene aliases:
No gene alias available
Parental gene description:
nuclear cap binding protein subunit 2, 20kDa [Source:HGNC Symbol;Acc:7659]

Genomic region (view in browser)





>retro_mputfur_9
ACCGTGTCCAACGATCTGAGAATTCTGCAAGGCGATTCCTCCCTGGAGCTGAGCGAGTAC
GGGGACCAGCAGCGCGGTGGTGATAATGATGAACAGGAGAAACTACTGAAGGAGAGCTCC
ACTCTCTACGTGGAGAATCTTTCCTTTCAAACCACCGAAGAGCAAATATATGAGCTCTTT
AGTAGATGTGGTGATGTCAAGCATGTATTTATGGGCCTGGATAAAATTAAGAAAAAGGCA
TGTGGCTTCTGTTTTGTAGAATACTATAACAGACTTGATGCCGAAAATGCCATGTGGTTC
CTAAATGGGACCTGCCTAGATGATCATATTATCCACACAGATTGGGATCTAGGCTTTAGA
GAGGGCAGGCAGTATGGCCGCCGCCGACCTGGGGGCCAAGTAAGAGATGACTTGCGTGAA
GATTTTGATGTTGGTAGGGGTGGCTCTGGAAAACAGGCCCAGGGCTGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR
L..L..DS..ELS.Y.DQ...GDN.EQEKLLK.S.TLYV.NLSF.TTEEQIYELFS..GD.K...MGLDK.KK.ACGFCFVEYY.R.DAENAM...NGT.
Retrocopy
LRILQGDSSLELSEYGDQQRGGDNDEQEKLLKESSTLYVENLSFQTTEEQIYELFSRCGDVKHVFMGLDKIKKKACGFCFVEYYNRLDAENAMWFLNGTC


Parental protein
LDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQ
LDD.II.TDWD.GF.EGRQYGR.R.GGQVRD..R.D.D.GRGG.GK.AQ
Retrocopy
LDDHIIHTDWDLGFREGRQYGRRRPGGQVRDDLREDFDVGRGGSGKQAQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide