RetrogeneDB ID:
retro_mputfur_903
Organism:
Location:
GL896968.1:3424171-3424649 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
90.74 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_903
ATGACCAACACAAAGGGAAAGAGAAGAGGTACCCATTATATGTTCTCTAGGCCTTTTAGA
AAACATGGAGTTGTTCCTTTGGCCACATACATGTGAATCTACAAGAAAGGTGATATGGTG
GACATCAAGGGATGGGCACTGTTCAAAAGGGAATGCCCCACAAATGTTACCATGGCAAAA
CGGAAGAGTCTACAATGTTACTCAGCATGCTGCTGGCATTGTTCTAAACAAACAAGTTAA
GGGCAAGATTCCTGCCAAGAGAATGAATGTACACATTGAGCATATTAAACATTCAAAGAG
CCGAGGTAGCTTCCTGAAGCGTGTGAAGGAAAATGAGCAGAAAAAGGAGGAAGCCAAAGA
GAAAGGTACTTGGGTACAACTGAAGCGTCAGCCTGCTCCGCCCAGAGAAGCACACTTTGG
AAGAACCAATGGAAACGAGCCTGAACTGCTGGAACCCATTCCCTATGAATTCATGGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKG-MGTVQKGMPHKCYHGKT-GRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKH
MTNTKGKRRGT.YMFSRPFRKHGVVPLATYM.IYKKGD.VDIKG.MGTVQKGMPHKCYHGKT.GRVYNVTQHA.GIV.NKQVKGKI.AKR.NV.IEHIKH
Retrocopy
MTNTKGKRRGTHYMFSRPFRKHGVVPLATYM*IYKKGDMVDIKG/MGTVQKGMPHKCYHGKT/GRVYNVTQHAAGIVLNKQVKGKIPAKRMNVHIEHIKH


Parental protein
SKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
SKSR.SFLKRVKEN.QKK.EAKEKGTWVQLKRQPAPPREAHF.RTNG.EPELLEPIPYEFMA
Retrocopy
SKSRGSFLKRVKENEQKKEEAKEKGTWVQLKRQPAPPREAHFGRTNGNEPELLEPIPYEFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide