RetrogeneDB ID:
retro_mputfur_909
Organism:
Location:
GL896970.1:1841713-1842126 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.29 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL28
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L28 [Source:HGNC Symbol;Acc:10330]

Genomic region (view in browser)





>retro_mputfur_909
ATGCCGGCCCACCTGCAGCGGATGGTCGTGCGGAATTGCTCCACCTTCCCCCTGATCAAG
AGGAACAAGCCGGCCTACAGCACTGAGCCCAACAACCTGAAAGCCCGCAACTTGTTCCGC
TACAACAGGCTGATTAACCGCAAGACCATGGGCATGGAGCCAGCGACCGAGGCAAGGGTG
TGGTGGTGGTCATGAAGCGCAGATCTGGCCAGCGGAAACCTGCCACCTCGTACGCGCGGA
CCACCATCAACAAGAACGCCAGGTCCACCCTCAGGAGTGTTCCGCACATGATCCGCAAGA
ACAAGAGCCGCACAGATCTGCGCATGGCTGTCATTCGCGGAGCCAGTGCCATCCTGCATA
GCCAGAAGCCTGTGATGATGAAGAGGAAGCTGGCCCGCCCCACCAAGCGCTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSAHLQWMVVRNCSSF-LIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAAD-GKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSVRHMIR
M.AHLQ.MVVRNCS.F.LIKRNK..YSTEPNNLKARN.FRYN.LI.RKT.G.EPA...GKGVVVVMKRRSGQRKPATSY.RTTINKNAR.TL.SV.HMIR
Retrocopy
MPAHLQRMVVRNCSTFPLIKRNKPAYSTEPNNLKARNLFRYNRLINRKTMGMEPATE/GKGVVVVMKRRSGQRKPATSYARTTINKNARSTLRSVPHMIR


Parental protein
KNKYRPDLRMAAIRRASAILRSQKPVMVKRKRARPTKSS
KNK.R.DLRMA.IR.ASAIL.SQKPVM.KRK.ARPTK.S
Retrocopy
KNKSRTDLRMAVIRGASAILHSQKPVMMKRKLARPTKRS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide