RetrogeneDB ID:
retro_mputfur_910
Organism:
Location:
GL896970.1:5857365-5858312 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.44 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
RPLP0
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371]

Genomic region (view in browser)





>retro_mputfur_910
ATACCCAGGGAAGACAGAGTGACCTGGAAGTCCAACTACTTCCTTAAGAACATCCAACTT
TTGGATTATTATCCAAAATGCTTCATTGTGGGAGCAGACAATATGAGTTCAAAACAGATG
CAACAGGTCAGCAGGTCCCTTTGCGGTAATGATGTCCTACTGATGGGCAAGAACACCATG
ATGTGCAATGCCATCTGAGGACATCTGGAGAAGAACCCAGATCTGGAAAAACTGTTACCT
CATATCTGGGAGAATGTGGGCTTTTTGTTCACCAAGGTTGACCTCACTGAGATCAGGGAC
ATGATGCTGGCCAATAAGATGCCAGGGGCCACCCATGCTGGTGCCATAGCCCCAAGTGAG
GTCACTGTGCCGGCCCAGAACACTGGTCTGGGGCCTGAGAAGACATACTTATTCCAGGCT
TTAGGCATCACCACTAAAATTCCCATAGGCACCACTGAAATCCTGAGTGATGCGCAGGTG
ATTAAGACAGGAGACCAAGTGAGAGCCAGCAAAACCACACTCATGAACATGCTGAACACC
TCCCCCTTCTTTGGGCTGATCATTAGCAAGTGTTTGGCAAAGGCAGGATCTACAAACCCT
GAAGTGCTTGATATCATGGAGGAAACCCTGCTTTCTCACTTCCTGAAGGGTGTCTGCAAT
GTTGCCAGCATATGTCTGCAGGTAGGGTACCAGGCTGTTCCATCAGTGCCCCATTCTATC
ATCAATGCATACGAGCAGGTTCTGGCTTTGTCTGTGGAAACTGATTACACCTCCCACTTG
CTGAAAAGGTCAAGGCCTTCTTGGCTGATCCATCTGCATTTGTGGCTGCTGCCCCCATGG
CTGCTGGCACCACTGCTGCACCTGCTGCTACAGCAGCCCCAGCCAAGGCTGAAGCACAGG
AAGAGTCCGAGGAGTCAGACAATGATATGGGATTTGGTCTCTTTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD
.PREDR.TWKSNYFLK.IQLLD.YPKCFIVGADN..SKQMQQ...SL.G..V.LMGKNTMM..AI.GHLE.NP.LEKLLPHI..NVGF.FTK.DLTEIRD
Retrocopy
IPREDRVTWKSNYFLKNIQLLDYYPKCFIVGADNMSSKQMQQVSRSLCGNDVLLMGKNTMMCNAI*GHLEKNPDLEKLLPHIWENVGFLFTKVDLTEIRD


Parental protein
MLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQ-QVFDNGSIY
M.LANK.P.A..AGAIAP.EVTVPAQNTGLGPEKT..FQALGITTKI..GT.EILSD.Q.IKTGD.V.AS..TL.NMLN.SPF.FGLII..QVF..G.IY
Retrocopy
MMLANKMPGATHAGAIAPSEVTVPAQNTGLGPEKTYLFQALGITTKIPIGTTEILSDAQVIKTGDQVRASKTTLMNMLNTSPF-FGLIIS/QVFGKGRIY


Parental protein
-NPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT-FPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAK
.NPEVLDI.EETL.S.FL.GV.NVAS.CLQ.GY..V.SVPHSIIN.Y..VLALSVETDYT..PLAEKVKAFLADPSAFVAAAP.AA.TTAAPAA.AAPAK
Retrocopy
\NPEVLDIMEETLLSHFLKGVCNVASICLQVGYQAVPSVPHSIINAYEQVLALSVETDYT/LPLAEKVKAFLADPSAFVAAAPMAAGTTAAPAATAAPAK


Parental protein
VEAKEESEESDEDMGFGLFD
.EA.EESEESD.DMGFGLFD
Retrocopy
AEAQEESEESDNDMGFGLFD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide